MmuEX6077177 @ mm9
Exon Skipping
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34820229-34822823:+
Coord C1 exon
chr17:34820229-34820522
Coord A exon
chr17:34821866-34822156
Coord C2 exon
chr17:34822533-34822823
Length
291 bp
Sequences
Splice sites
3' ss Seq
TCTCTGCTCCCTTTTCCTAGTGA
3' ss Score
9.04
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACAGGGCTCAGGAACAGCCTGGGAAGCCATCAGTCCAGCCACGCCTGGGTGAACTGACAGTGACAGGCCTGACCTCTGATTCCCTGCTCCTGCACTGGACTGTCCCAGAGGGGGAGTTTGACTCCTTCCTGATCCAGTACAAGGACAAAGACGGGCCCCAGGCGATATCCGTGGAGGGACCCCAGCGTTCTACACCCATCTCAGGCTTGGAACCAGGACGCAAGTACAAATTTATCCTGTATGGACTCATCGGCAAGAAGAGGCATGGCCCACTTATGGCTGAAGCCAAGATCT
Seq A exon
TGATTCAGAGTGACCCTGACCCAGGATCCCCACCCCGCCTGGGAGAGCTATGGGTGACAGACCCCACTCCACACTCATTGCACCTCTCCTGGACTGTTCTCGGAGGCCAGTTCGACTCCTTCGTGGTCCAGTACAGAGACAAGGAAGGCCAGCCCCGTGTGGTACCTGTGGAGGGGCCTGATCGCTCAGTGGTGATCTCCCCACTGGACCCCAATCGCAAGTACAGGTTCACTCTGTTTGGGATTGCCAATAAGAAGCGGTACGGGCCCCTTACTGCTGATGGCACTACTG
Seq C2 exon
CTGCAGAGACGAAAGAGGAGTCCTCAGAGCCGCCCCGCCTCGGCGAACTGACTGTGACTGGTGTGACCCCAGACTCCCTGCGCCTGTCCTGGACAGTGGCCCGGGGTCCCTTCGACTCCTTTGTAATCCTTTACAAGGATGCACAGGGCCAGCCCCAGAGTGTACCCATCGAAGGTGATGAGAATGAGGTCACTGTCCCCGGCCTGGAGTCCAACAGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCGGTATCAGTGGTGGCCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.398 C2=0.520
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=78.8)
A:
PF0004116=fn3=WD(100=84.7)
C2:
PF0004116=fn3=WD(100=83.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAGGACAAAGACGGGCC
R:
GGCCCTGTGCATCCTTGTAAA
Band lengths:
308-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: