HsaEX6046429 @ hg38
Exon Skipping
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32081368-32084709:-
Coord C1 exon
chr6:32084413-32084709
Coord A exon
chr6:32082036-32082326
Coord C2 exon
chr6:32081368-32081673
Length
291 bp
Sequences
Splice sites
3' ss Seq
TCTCTACCCACTCTTCCTAGTGC
3' ss Score
7.34
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACAAGGATGAGGAGAAGCCTGGGAAGTCCTCAGGCCCACCACGCCTGGGTGAGCTGACGGTGACAGACAGGACCTCCGACTCCTTGCTCCTGCGCTGGACGGTCCCCGAGGGCGAGTTTGACTCCTTCGTGATCCAGTACAAAGACAGGGACGGGCAGCCCCAGGTGGTGCCCGTGGAAGGACCCCAGCGCTCGGCCGTCATCACCTCCCTGGATCCTGGCCGCAAGTACAAATTTGTCCTGTATGGGTTTGTTGGCAAGAAGAGGCATGGTCCGCTGGTGGCTGAAGCCAAGATCT
Seq A exon
TGCCTCAGAGTGACCCAAGTCCAGGGACTCCACCCCACCTGGGAAACCTGTGGGTGACAGACCCTACCCCAGATTCACTGCACCTCTCCTGGACTGTCCCTGAGGGCCAGTTTGACACCTTCATGGTCCAGTACAGGGACAGGGATGGACGGCCCCAGGTGGTACCTGTGGAAGGGCCCGAGCGTTCATTTGTTGTCTCCTCACTGGACCCTGACCACAAGTACAGATTCACTCTGTTTGGAATTGCGAACAAGAAGCGGTATGGCCCCCTCACGGCCGATGGCACCACTG
Seq C2 exon
CTCCAGAGAGGAAAGAGGAGCCCCCCCGCCCTGAGTTCCTGGAGCAGCCCCTCCTGGGGGAACTGACAGTGACCGGCGTGACCCCAGACTCCTTGCGTCTCTCATGGACAGTGGCCCAGGGCCCCTTCGACTCATTCATGGTCCAGTACAAGGATGCACAGGGGCAGCCCCAGGCAGTGCCTGTTGCGGGGGATGAGAATGAGGTTACTGTCCCCGGCCTGGATCCCGACCGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCCGAGTCTGTGGTGGCCAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477-'20-29,'20-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.490 C2=0.680
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=80.0)
A:
PF0004116=fn3=WD(100=83.7)
C2:
PF0004116=fn3=WD(100=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCACCTCCCTGGATCCT
R:
CTCATTCTCATCCCCCGCAAC
Band lengths:
303-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains