BtaEX0038746 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85087862-85089440:-
Coord C1 exon
chr6:85089378-85089440
Coord A exon
chr6:85088396-85088472
Coord C2 exon
chr6:85087862-85087928
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTTTTAATGTTCTCAATAGGCA
3' ss Score
8.43
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GAATCATTAGAGATGCAACTAAAACATCCAAAGTACCTTATTGTGGATTTTAGCAAACCTGAG
Seq A exon
GCACCTTTAGAGATTCACTTAGCCATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAGTCGCAAGCCAAATATTGG
Seq C2 exon
GTGCCAACAAGATTCAGAAGAACTGTTGAAACTAGCAACATCTATAAGTGAAACCTTGGAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837-'12-17,'12-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTAGAGATGCAACTAAAACATCC
R:
CTTCTCTTCCAAGGTTTCACTTATAG
Band lengths:
127-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development