MmuEX6018422 @ mm10
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86147075-86148931:-
Coord C1 exon
chr5:86148869-86148931
Coord A exon
chr5:86147805-86147881
Coord C2 exon
chr5:86147075-86147141
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATATTTTTTTTCCAAATAGGCA
3' ss Score
8.87
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAACCCCTGGAGAGCCAGATAAAACATCCAAGGTGCCTTATTGCAGATTTTAGCAAACCTGAG
Seq A exon
GCACCTTTAGAGATTCATCTCGCTATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAACCGTAAGCCAAATATCAG
Seq C2 exon
ATGTCAGCAGGATTCAGATGAACTATTGAAGCTAACAGTATCTATAAATGAAACCTTGGAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-'15-17,'15-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGCCAGATAAAACATCCA
R:
ACTGTTAGCTTCAATAGTTCATCTGA
Band lengths:
95-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types