GgaEX1061509 @ galGal3
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53148329-53150214:-
Coord C1 exon
chr4:53150152-53150214
Coord A exon
chr4:53149074-53149150
Coord C2 exon
chr4:53148329-53148395
Length
77 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTGTTGTCTTAACAGGCA
3' ss Score
8.37
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GAACGGTTGGAGAAGCAGCTAACAAATCCAATGTGCCTAGTTGCAGATTTTATCAAGCCTGAG
Seq A exon
GCACCTTTGCAAATCCACATTGCCATGCTCGCATTGAACCACTTTGAGGAGAACTTTGGTCGCATGCCAAACATTGG
Seq C2 exon
ATGCCATCAAGATGCTGAGGAAATGCTGAAAATAGCCATATCAATAAGTGAAACCCTGGAAAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGTTGGAGAAGCAGCTA
R:
TGTTTTCCAGGGTTTCACTTATTGA
Band lengths:
128-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]