BtaEX0039151 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:30972358-30993455:+
Coord C1 exon
chr27:30972358-30972390
Coord A exon
chr27:30992477-30992491
Coord C2 exon
chr27:30993270-30993455
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCATGCATTCAATAGGAT
3' ss Score
7.35
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATAAAAAACCTCTTCATGAAATAAAACCCCAAA
Seq A exon
GATGGAGTAGGAGAG
Seq C2 exon
GCATCGAGAATGCCAGTGACATCGCTTTGTACTCAGGCTTGGGTGCCGCGGTTGTGGCTGTTGCAGTCCTGGTCATCGGCATCACCCTGTACAGACGCAGCCAGAGTGACTATGGTGTGGACGTCATCGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000039849fB7596
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTCATGAAATAAAACCCCA
R:
GTACAGGGTGATGCCGATGAC
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development