HsaEX1042991 @ hg38
Exon Skipping
Gene
ENSG00000156687 | UNC5D
Description
unc-5 netrin receptor D [Source:HGNC Symbol;Acc:HGNC:18634]
Coordinates
chr8:35705929-35722395:+
Coord C1 exon
chr8:35705929-35705961
Coord A exon
chr8:35721455-35721469
Coord C2 exon
chr8:35722210-35722395
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCATGCATTCAATAGGAT
3' ss Score
7.35
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATAAAAAACCTCTTCATGAAATAAAACCCCAAA
Seq A exon
GATGGAGTAGGAGAG
Seq C2 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCGGGCTTGGGTGCTGCCGTCGTGGCCGTTGCAGTCCTGGTCATTGGTGTCACCCTTTACAGACGGAGCCAGAGTGACTATGGCGTGGACGTCATTGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156687-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTCATGAAATAAAACCCCA
R:
GGTGACACCAATGACCAGGAC
Band lengths:
112-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains