MmuEX0050641 @ mm10
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 netrin receptor D [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:28724260-28741512:-
Coord C1 exon
chr8:28741480-28741512
Coord A exon
chr8:28725148-28725162
Coord C2 exon
chr8:28724260-28724406
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCATGCATTCAATAGGAT
3' ss Score
7.35
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ATAAAAAACCTCTTCATGAAATAAAACCCCAAA
Seq A exon
GATGGAGTAGGAGAG
Seq C2 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCCGGCTTGGGTGCAGCCGTGGTAGCTGTTGCGGTCCTGGTCATTGGTGTCACCCTCTACAGACGGAGCCACAGTGACTACGGAGTGGATGTCATTGACTCTTCTGCATTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTCATGAAATAAAACCCCA
R:
AGAGGGTGACACCAATGACCA
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types