MmuEX0050640 @ mm10
Exon Skipping
Gene
ENSMUSG00000063626 | Unc5d
Description
unc-5 netrin receptor D [Source:MGI Symbol;Acc:MGI:2389364]
Coordinates
chr8:28724221-28759122:-
Coord C1 exon
chr8:28758958-28759122
Coord A exon
chr8:28741480-28741512
Coord C2 exon
chr8:28724221-28724406
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTCTTTCTTTTAGATA
3' ss Score
12.97
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGGATGGCAGCTGGGAAGTGTGGAGTGAATGGTCAGTCTGCAGCCCAGAGTGTGAACATCTTCGTATCCGTGAGTGCACAGCTCCACCCCCAAGAAATGGGGGCAAGTTCTGTGAAGGTCTCAGCCAGGAATCTGAAAACTGCACAGATGGTCTCTGCATTCTAG
Seq A exon
ATAAAAAACCTCTTCATGAAATAAAACCCCAAA
Seq C2 exon
GCATTGAGAATGCCAGCGACATTGCTTTGTACTCCGGCTTGGGTGCAGCCGTGGTAGCTGTTGCGGTCCTGGTCATTGGTGTCACCCTCTACAGACGGAGCCACAGTGACTACGGAGTGGATGTCATTGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTTCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063626-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCACCCCCAAGAAATG
R:
TACAAAGCAATGTCGCTGGCA
Band lengths:
118-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types