BtaEX0039145 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010241 | UNC5D
Description
Bos taurus unc-5 homolog D (C. elegans) (UNC5D), mRNA. [Source:RefSeq mRNA;Acc:NM_001192518]
Coordinates
chr27:30951840-30993455:+
Coord C1 exon
chr27:30951840-30952004
Coord A exon
chr27:30972358-30972390
Coord C2 exon
chr27:30993270-30993455
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCTTTCTTTTAGATA
3' ss Score
12.93
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGGACGGGAGCTGGGAAGTGTGGAGTGAGTGGTCGGTCTGCAGCCCAGAGTGCGAGCATTTGCGGATCCGAGAATGCACAGCCCCTGCCCCGAGAAACGGGGGCAAATTCTGCGAAGGTCTAAGCCAGGAATCTGAGAACTGCACAGACGGCCTTTGCATCCTAG
Seq A exon
ATAAAAAACCTCTTCATGAAATAAAACCCCAAA
Seq C2 exon
GCATCGAGAATGCCAGTGACATCGCTTTGTACTCAGGCTTGGGTGCCGCGGTTGTGGCTGTTGCAGTCCTGGTCATCGGCATCACCCTGTACAGACGCAGCCAGAGTGACTATGGTGTGGACGTCATCGACTCTTCTGCATTGACAGGTGGCTTCCAGACCTTCAACTTCAAAACAGTCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010241-'10-22,'10-19,11-22
Average complexity
C1
Mappability confidence:
100%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGGCCTTTGCATCCTAG
R:
TCTGTACAGGGTGATGCCGAT
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development