DreEX0083403 @ danRer10
Exon Skipping
Gene
ENSDARG00000092722 | unc5da
Description
unc-5 homolog Da (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-080908-2]
Coordinates
chr21:16239812-16250206:-
Coord C1 exon
chr21:16250042-16250206
Coord A exon
chr21:16247722-16247757
Coord C2 exon
chr21:16239812-16240000
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTTTTTTTTGCAGACA
3' ss Score
11.46
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGGACGGTGGCTGGTCTGAGTGGACTATGTGGTCTGAATGTACTTCTGAATGTGAAAGGCAGCGCACCAGAGAGTGTACAGACCCGGAGCCAAAACATGGAGGAAGACTGTGCGATGGAGCCGCTCTAGACACAGACAACTGCACTGGAGACCTCTGCATTCAAG
Seq A exon
ACAGGAAGCTTCTTCATGATGTGAAGGTTCCACAAG
Seq C2 exon
CTGATGTGGAGAGCAGTAATGACGTGGCTCTTTACTCTGGTCTGGCTGCGGGTGTTGTTACTATGGTTGTGTTGGTCATTGCTGTGACGTTGTATCGGAGGAATCAAAGTGAATATGGCGTGGATGTCATCGATTCTTCTGCACTGACTGGAGGATTTCAGTCCTTCAGCTTCAAAAGTGCCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092722-'5-8,'5-6,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=87.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGGAGACCTCTGCATTC
R:
CCTCCGATACAACGTCACAGC
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]