GgaEX0001868 @ galGal3
Exon Skipping
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1896106-1902785:+
Coord C1 exon
chr22:1896106-1896270
Coord A exon
chr22:1898806-1898838
Coord C2 exon
chr22:1902681-1902785
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTCTCTCTCTAGATA
3' ss Score
13.16
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGGATGGAAACTGGGAGGTGTGGAGTGAATGGTCTGTGTGCAGCCCGGAGTGCGAGCATTTGAGGGTTCGGGAATGTATTGCACCAGCGCCACGAAACGGAGGGAAGTACTGCGAGGGCCTGAGCCAGGAGTCAGAGAACTGCACTGAGGGGCTTTGCATTCAAG
Seq A exon
ATAAAAAACCTCTTCATGAAATAAAATCCCAAA
Seq C2 exon
ATATAGAGACAGCCAGTGACATTGCCCTGTACTCCGGCCTGGGAGCAGCAGTCATTGCTGTAGCTGTGCTGGTGGTTGGTGTTACCCTTTACAGACGGAGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGAAACGGAGGGAAGTAC
R:
CGGAGTACAGGGCAATGTCAC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event