DreEX0083415 @ danRer10
Exon Skipping
Gene
ENSDARG00000061541 | unc5db
Description
unc-5 homolog Db (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-060531-162]
Coordinates
chr5:26739328-26745045:+
Coord C1 exon
chr5:26739328-26739492
Coord A exon
chr5:26740987-26741019
Coord C2 exon
chr5:26744860-26745045
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTCTCTGCAGATG
3' ss Score
13.85
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGGATGGAGTTTGGGAGGAGTGGAGCGAGTGGACGATGTGTAGTGCGCAGTGTGAGAGACAGCGATGGAGGGAGTGCAACGATCCTCCACCCCGTCACAGAGGCAAGATGTGTGAGGGAGAAGGTCAAAGCACAGAGAACTGCACTGGAGGATTGTGCACGCAAA
Seq A exon
ATGGAAAGCTGATGCATGATGTTAAGCCACAGA
Seq C2 exon
GCATGGAGAACTCAATGGATGTAGCGCTGTACTCTGGTTTGGCTGCGGGTGTGATCGCTGTGGTTGTCCTCATCGTGGCCATTACCCTCTACAGGAAGAGCCAGAGCGAGTATGGAGTGGACGTCATTGACTCATCAGCTCTCGCTGGAGGATTCCAGTCCTTCAACTTCAAAACCACCAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061541_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=85.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACAGAGAACTGCACTGG
R:
AGAGGGTAATGGCCACGATGA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]