GgaINT0136162 @ galGal3
Intron Retention
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1896106-1898838:+
Coord C1 exon
chr22:1896106-1896270
Coord A exon
chr22:1896271-1898805
Coord C2 exon
chr22:1898806-1898838
Length
2535 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTGTCTCTTTCTCTCTCTAGATA
3' ss Score
13.16
Exon sequences
Seq C1 exon
TGGATGGAAACTGGGAGGTGTGGAGTGAATGGTCTGTGTGCAGCCCGGAGTGCGAGCATTTGAGGGTTCGGGAATGTATTGCACCAGCGCCACGAAACGGAGGGAAGTACTGCGAGGGCCTGAGCCAGGAGTCAGAGAACTGCACTGAGGGGCTTTGCATTCAAG
Seq A exon
GTGGGTAACAGTTTGTGCTGCGCGGCCCAACACGGGTAGCACAATCCAGGTATGGTGCTGGATCTGCCTCACATCTGTGTCAGTAGAGCTCCCGTGGGTGGTTTCGCTGTTTTTTGTAGCATGTACTTTACCTATTCATTATCAGATGACTGAAAATACAAGTAAAGGTTTTCTGCGATGTGTAATTATGGCCATCTGCTACAACATATTTCATAGAAAGTACTCCTGAGCTTCCTTCTTTTTCGTGCAAGTGAATTGGCAAAGCACCATCATGAATACGCTTGGTGCAAGAGCTGTTTTAAGTCAAAGTTAACTTCCAGTTTCTTGCAAGTAATAAACAAAGGCAAACCTACTTCACAGCCAGTTCCCTGGGAAAAGATTTGCCCTTCTTAAGTGTCTGGAAAGCATCTCCTTAATGAAAGGAGGCCCCGTTTAGGTCATGTTTCTAAGGAAGGCCTTAATGATGCTGCAAGGTGGTGAAGACCACCCGTCCTACTTTGGGTGTGATATCCTTGCACATTGTGTGGTTGCATGTCTGTCCTGCATTCCTGTGCAATGCTGTGCTTATGCTTTGGGGGCAAAGGAGCAAATGCTAACCTGAAAGGAGCATCTGGCCTGGGGAAAAGCCATGCTTGTTAAGCACTGAGATGGATGATTTATGTTTTACCTGACAGAGCAGGCTTCATTCCATGGCAGCAGTCACTGGAGCTCCCCCTGTCCTTGTAGCACAGTTTGTTTCAGATACAGACTGGGCCTCTGGGCTCTGCTGCGGTAACACAAACACAGGCTTTTCCTGGCAGCTTCTCCAGCTCAGCTTCTCTGCTTCTGAGCTCATCCAGGCAGGTTTTGGAATGCCCCTCTGTCAGTCTCTGTGTGGCACTGAGTTATCGCTTCAGTATCAGCTGTCTGATGTTACAGAAGTGCAGTGGGTCAGTGCTGTGCTAGGCAGCTCTCTTTCAAGGACTAGCTCTTTTATTCAATATTGATTCCAGGAGTAAATTTGGCAGAAGTATTTTAGGACAAAACTCTCTGCAGGTTTTTGCATGAACAAAGGTTTCATGTACTGGTCAGATCTCTGTCCGTATTACTGCAGGTAGAGGAAAAAGGATGGAATGCTTGGAGTTCCCCTCATAGGCCTGGTACCAATCCACAGTAATTTGGTGTTGAGAGCCTTCTCAGTATTTATACACAACAGACTTTCAATGGGACTTGAGCAGCATAAGAGGAAGTCAAAGCCCTGTGCTACAGAAGCTGTTGCTCCTCCTTTTGCTGGGCAGTAGCAGAGAACGTGCTGGCTCTGGGATTTCCATGTGCATTCAATTAGACTGAAGTATTGAACGTCTCATTTCTTTCATCTTAGAGCTTGATGCCATTCCTCCTTTATGGGTCGTGCTGTATACGTATACTGGTGTCAAATTATTTTTAGGAGTGTAATTGCTTTCTCAGCTAATAGGAATTGATGCAATTACCCTATTTTTTGAATCCTTTTCCCCTGCTCATCTTCCGATATGTTCCTTTCCTTCTCTGCTTTCCATCCCACTGGGAATTGCAAAGGAAATGCAGTGCAGTGCTTCAGATAACTAATCTCTTGGAGGTTATTTATCAGGCACAACTTGTTAACTTTGTTCCTTTCATGAGGCAAAAATAGAAATGAAATGTTCCTCTGGTTAACGAGGAGGAACTCTAATGGAAGTAAAAGGAAGAACATAAGATGCTGGAGATATGTGGCCATGTTCTGAACAAGCAGGAACAGTTCTAACCCCCAGTGGGGATTTTCTGACTTGGTGTCAGTGAATGAAACAGCAATAAATGGGGGGCTGTGCTCAGGTTATCCCTTCTTCAGTCCCTGACCAGAGAGGTTGGGAGTAGAAGGAGGCATTCTTTCAGTCCCAAGAATGTCACTTCTTCCTGATTCTTGCTTTGGTTTTTGATTGACTGTGGATGGATCCAGATAGCCCAGTCCATGTTTTACTAGTGTAAAACCCCAGCTTGAAAAAGTTAATTGCACATCTATAAATTCATACTTAGATGTTCAAGTAGTGCATTGGTTCTGTATGTTATTTTTATACATGCATAGAGGTCAGTAGTTTTGTGTACTTAATAGAGACATAAATATGAGTATATTGTATGTTTTGAGGTATAATAAATGTCTAAAATATGTCACTAACTTTTTAATATATCAAGCATACAATGAAAAACTTCCTAACTGAACTGTCAAGTGATCCACTTTCCATATATTGAGCTTCCTTGTTGGATGCATTGTGTTCTAAATAACAGCATCCAAAAAAAGCTAACAAATACTCGAATTAACCAAGTGAGAAATGGCTGCAAAAGGACTTCCTGAAAGCAATTCAGAATAAGATGAAGGGAAAAAAAATATAGACAGTGTAAAATATTCACATTGTCAGCAAACACAGAGAAAATGTTTCATTTATAGAGCTAGACAGACGCGATACAGGAAATAGATGTGCTCCATGTAAATTTATTAAGTGCAACTTTCTCTCTCTCTCTCTCTCTGTCTCTTTCTCTCTCTAG
Seq C2 exon
ATAAAAAACCTCTTCATGAAATAAAATCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608:ENSGALT00000002447:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]