DreINT0171892 @ danRer10
Intron Retention
Gene
ENSDARG00000061541 | unc5db
Description
unc-5 homolog Db (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-060531-162]
Coordinates
chr5:26739328-26741019:+
Coord C1 exon
chr5:26739328-26739492
Coord A exon
chr5:26739493-26740986
Coord C2 exon
chr5:26740987-26741019
Length
1494 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTTTTTTTTTCTCTGCAGATG
3' ss Score
13.85
Exon sequences
Seq C1 exon
TGGATGGAGTTTGGGAGGAGTGGAGCGAGTGGACGATGTGTAGTGCGCAGTGTGAGAGACAGCGATGGAGGGAGTGCAACGATCCTCCACCCCGTCACAGAGGCAAGATGTGTGAGGGAGAAGGTCAAAGCACAGAGAACTGCACTGGAGGATTGTGCACGCAAA
Seq A exon
GTAAGTATGTGCTCAAGACATCAGCTGCATCGTCATTACATACAGAACTCTCAATATATTGCACACTTGAATTTCAAAGGGGACCTATCAGGAAAATCAGACCGTTTGCATCTTTAATCCTAGAAAAAAAAGAACAACAACATATTAGCTTTGTTTAGGTAAGCTTTTCTCTGCAAAAACGGAAACATTTGCCATTAAGATTTTGCTCTCCTAGTGGCAAAAGAAAATTCACAATTTACAATGTTTATTTTGCTAGCGCACATTGTTATTCTTTGGGTGAACAACTAACCATTTCACACGTAACTTCTAAGTAGTCCTGTTGACCCCCTTAATGAGTGTTTTATTGTTACCATTATTTAGCATGCATCACTTTAAAATTCCCATGGTGACAAGTTAAGTTTATCATAACACACTGCAATTATTTATAGATTTGGCTTTGTTTCTTTTATCCCTTTTCAAATATTTACAAATGGATTAATTATTCTGTAAGTTATTTAATATTCCAATTTTTAAATATGTATAAGAACATGTCTTTTAAACAATTTAACAATGATCATATTATTTGATATATGATGGGTGATAGGGATTGCCATGCTTAGTCTACACTGCAAGAGAGAAAAGATCTGGATTTACATGTTTACTTATAATTTCCGTACTAAATGAAAGTAAACGACTGTTTAACTGGGAGAGGAATAGAGTAAATGTTCTAGTAACATACACAGTGTGTATGTTATGTAAAAAAAAACATATATTTATATTATGTTATAATATAAACTTTGTATAAAATTATTCATTGCACTCTTAAGTTTTCCAGACTATGACAACTTCCGCAACTGAGAAACCTGGAAATGTGAAAAGGGTCTATTTCTGACTGTGAAATTTGCCTGTTTTGTTGTTTCTGGAGTGTCAGAATAGCTTATAAAGTCTCTGCCCTTTTCTAGAATGCAGCAGTTCATTTGCAGTTAAAGGTACACACAAAACATACTTTTTTGCTTTCACAAAAATGATGCAAATTCCACAAGCTATAATAAACAATCTATGGTATTTCGAGCTGAAACTTCACAGACACATTCTGAAGACACCAGAGATTTATTTGCCACCCTATGAAAAGGTGTATAATATGTCTCCTTTAACATTCATCGTGAAGCTCGGGGAAGTGTGATAATAGTCTGCTGAAAGTAGATGAAGGTGATGGCATCATGCCCTTTACTCCTCTCCATGTCTCCCTCGTAGCTATTATTATGATGAGAATCCTCTCTGATTTCTTGTCCTTAATGAAGGATGGAAACATCCTGAAGCCTAAGTGATCCAAAACTATCTGCCAAGTGCTGCCATTGCCAGCGATGCCCAGCAACAGTCTCCACAGCTGATGTTGGCATAGCCTGCAGTTGGACATGTACCCGTGATGAGAATCAGAGAGCGTGTTTGCAAGAAGTATTACGGGGACGGACTGTAATTCTCTCTCCTTTCTTGTTTTTTTTTTTTTCTCTGCAG
Seq C2 exon
ATGGAAAGCTGATGCATGATGTTAAGCCACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061541:ENSDART00000087857:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAGTTTGGGAGGAGT
R:
TCTGTGGCTTAACATCATGCA
Band lengths:
198-1692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]