BtaEX0039577 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104686352-104689323:-
Coord C1 exon
chr11:104689221-104689323
Coord A exon
chr11:104687379-104687393
Coord C2 exon
chr11:104686352-104686450
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCCCACGCTTTCAGATT
3' ss Score
9.72
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGAGCACGGCGTGGGAGAGGACATCTATGACTGCGTCCCGTGCGAGGATGACGGGGACGACATCTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
ATTAGATACATGCAG
Seq C2 exon
AAAATGGGCATGACAGAGGATGACAAGAGAAACTGCTGCCTGCTGGAGATCCAGGAGACGGAGGCCAAGTACTACCGGACGCTGGAGGACATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-MICROEX2
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Inclusion Isoform:
ENSBTAT00000005932fB7681
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTATGACTGCGTCCCGTG
R:
TGTCATCCTCTGTCATGCCCA
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development