RnoEX0097867 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5845146-5847942:-
Coord C1 exon
chr3:5847840-5847942
Coord A exon
chr3:5846193-5846207
Coord C2 exon
chr3:5845146-5845244
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTGCTCCTCCATGCATTCAGATC
3' ss Score
7.31
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CGAGCATGACCTGGGTGAGGACATCTACGACTGTGTCCCGTGTGAAGATGAAGGAGATGACATTTATGAGGACATCATCAAGGTGGAGGTGCAGCAGCCCATG
Seq A exon
ATCAGATACATGCAG
Seq C2 exon
AAAATGGGACTAACCGAGGACGACAAGAGGAGCTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'13-11,'13-10,14-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Main Inclusion Isoform:
ENSRNOT00000009893fB16297
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACGACTGTGTCCCGTGT
R:
GTCGTCCTCGGTTAGTCCCAT
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]