DreEX0084167 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:18029271-18032995:-
Coord C1 exon
chr21:18032890-18032995
Coord A exon
chr21:18032729-18032743
Coord C2 exon
chr21:18029271-18029369
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTGCCTCCTTACTGCTGCAGATC
3' ss Score
9.59
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGAGCATGATGTGGGAGAGGACGACATCTATGACTGCGTCCCCTGCGAGGATGATGGGGACGACATCTACGAGGACATCATCAAGGTGGAGGTTAGACAGCCTATG
Seq A exon
ATCAGATACATGCAG
Seq C2 exon
AAAATGGGCATGACTGAAGATGATAAGAGGAACTGCTGCTTGGTGGAAATTCAGGAGACTGAGGCAAAATACTACAAGACACTGGAGGACATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(11.5=60.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGACGACATCTACGAGG
R:
TTTCCACCAAGCAGCAGTTCC
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]