BtaEX0041026 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36402051-36405968:-
Coord C1 exon
chr12:36405803-36405968
Coord A exon
chr12:36404667-36404701
Coord C2 exon
chr12:36402051-36402180
Length
35 bp
Sequences
Splice sites
3' ss Seq
TTAAATTTGTTTGTTTTTAGATC
3' ss Score
10.02
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCTGCCAGGTGTGACTGCTGTAAGTCTCAAGGAGCCCTTCGGGAGAGGGTGCAGTGGCGTGGCGAGATGAAGCATTTCTGTGACCAGCACTGCCTGTTACGCTTCTACTGCCAGCAGAGCGAGCCCAACATGACGACCCAGAGGGGACCTGAGAACTTACACTACG
Seq A exon
ATCAGGGTTGTCAGACGTCCCGAACCAAAATGACA
Seq C2 exon
GGTTCAGCACCACCCCCTTCTCCAACCCCCAACAAGGAGATGAAGAACAAGGCAGTTCTGTGCAAACCTTTGACTATGACCAAGGCGACCTACTGCAAACCCCACATGCAGAGCAAGTCCTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'30-30,'30-26,31-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.222 C2=0.386
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACGCTTCTACTGCCAGCA
R:
ATCTCCTTGTTGGGGGTTGGA
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development