HsaEX6039449 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20625579-20632844:+
Coord C1 exon
chr13:20625579-20625738
Coord A exon
chr13:20626417-20626451
Coord C2 exon
chr13:20632715-20632844
Length
35 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTGTGTTTTTTAGATC
3' ss Score
11.28
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGGTGTGACTGTTGTAAATCTCAAGGAACTCTTAAAGAGCGAGTTCAGTGGCGTGGGGAAATGAAACATTTCTGTGATCAACATTGCTTACTGCGTTTCTACTGTCAACAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACTTACATTATG
Seq A exon
ATCAGGGTTGTCAGACATCTCGAACCAAAATGACA
Seq C2 exon
GGTTCAGCACCACCCCCTTCTCCAACACCTAACAAAGAGATGAAGAACAAAGCAGTTCTTTGCAAACCTTTAACAATGACAAAAGCTACTTACTGTAAACCTCACATGCAGACCAAATCTTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.333 C2=0.384
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATCAACATTGCTTACTGCG
R:
TAGGTGTTGGAGAAGGGGGTG
Band lengths:
119-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)