GgaEX0025503 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:183346070-183349199:-
Coord C1 exon
chr1:183349034-183349199
Coord A exon
chr1:183348109-183348143
Coord C2 exon
chr1:183346070-183346199
Length
35 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTTGCATTTTTAGATC
3' ss Score
11.14
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCTGCGCGGTGTGACTGTTGTAAGTCACAGGGAACTCTCAGAGAGAAAGTGCAGTGGCGTGGAGAAATGAAACACTTTTGTGATCAGCACTGTTTGCTCCGTTTCTACTGTCAACAAAATGAACCAAATCTGGCAACCCAAAAAGGACCGGAGAACTTGCAATACG
Seq A exon
ATCAGGGCTGTCAAACTCCCCGAACAAAAATAACA
Seq C2 exon
GGGTCAGCACCACCGCCTTCCCCAACCCCTAACAGAGAGATGAAGAACAAGGCTGTTCTGTGCAAGCCTTTGACAATGACAAAAGCCACGTACTGTAAACCTCATATGCAGACAAAATCTTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'20-30,'20-29,21-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.364
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCAACCCAAAAAGGACC
R:
TGTCAAAGGCTTGCACAGAACA
Band lengths:
113-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]