DreEX6035997 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21629120-21629627:-
Coord C1 exon
chr9:21629462-21629627
Coord A exon
chr9:21629332-21629363
Coord C2 exon
chr9:21629120-21629249
Length
32 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGGTCTGCTTACAGGGT
3' ss Score
9.3
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
GCGGCGCGCTGTGACTGCTGTAAGGTACAGGGGAACCTGACGGAGTCTGTACAGTGGCGTGCAGAGTTAAAGCAGTTCTGTGACCAGCAGTGTCTCCTGCGCTTCTACTGCCAACAGAACGAGCCCAACATGGCTACACAGAAAGGCCCAGAAAACACTGCTTTAG
Seq A exon
GGTTTGGAGGACCAACCCAAACATCCAAAATG
Seq C2 exon
GGCCCTGTATCGTACGCTGGCGGAGGGATCCTGAAGGATGTGAAGAATAAAGCTGTGCTCTGTAAGCCCCTCACCATGACCAAGGCCACATACTGTAAACCTCACATGCAGAGCAAACCACTGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'20-14,'20-13,21-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.455 C2=0.159
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=60.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCTACACAGAAAGGCCC
R:
TTGGTCATGGTGAGGGGCTTA
Band lengths:
121-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]