BtaEX0041113 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031874 | ZNF165
Description
Bos taurus zinc finger protein 165 (ZNF165), mRNA. [Source:RefSeq mRNA;Acc:NM_001191376]
Coordinates
chr23:30332529-30336648:-
Coord C1 exon
chr23:30336166-30336648
Coord A exon
chr23:30335503-30335641
Coord C2 exon
chr23:30332529-30333512
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATGTACTTTGTTTTTCTCAGATT
3' ss Score
9.48
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAGAGTTCTTAAAACTAAAAAAGGCTCTTCACAGAGCAGAAGCGGGATTCTGATAATACAGTTTATTTCAAGATGGCAACTGAATCAAAGAAAGCTACAGCTCAGAACCTTCAGGAGGATGAAGGACTTCTGATAGTGAAGATGGAAGAGGAAGATTTTGTCTGGAGGCAGGGTGCTTGCTTACAGAGGAATGATCCCCTCAGGCAGGAGCTCTGCCGGCGGCTGTTCCGGCAGTTCTGCTACCAGGATTCTCCCGGGCCCCGAGACGCACTGAGCCAGCTCCGGCAGCTCTGCTGTCAGTGGCTGAAGCCAGAAACCCAGACCAAGGAGCAGATCCTGGAGCTGCTAATTCTGGAACAGTTCCTGGCTATCCTGCCAGGGGATCTGCAGGCTTGGGTGCGTGAACGTTATCCAGAGAGTGGAGAGGAAGCAGTGACCCTACTGGAAGATTTAGAGAGAGGCACTGATGAAGCTGTACTCCAG
Seq A exon
ATTCCAGTCTGTGGACATGGACAAGAACCATTCAGGAGAAAAGTGGCATCTCCTGGGCCAGCACTTAGTGTCCCGTTCCAGCCAGTGGACACCACGGCCCTTCATGGTTCTTCAGAACCCCAGCTGCTACTGGACTGTG
Seq C2 exon
ATAACAAGAGTGAAAACAGTGAATCCATGCCAAAGCTGGACATTTATGAGAAAATGGAATCGCAGAAAATTGTATCAGGAAGAATTTCAGAATTTGTGTCAGAAGGATCTGCTGAGCCTCAAGACATCTGTAAGTCTGCAGGCAAGATAAAGAGGCAGCAGGAAAAAGACTCAGGGGAGTCTCAGAAATCATCATCTGCTCAGGATGCTGCTTTCAGTAAAATCCTCACCCACAAAAATACACTTAGAGGTGAAATAATAAGCCATGATGGCTGTGAGAGAAACTTAAATCTGAACTCAAATGAATTTACACACCAAAAATCTTGTAAACACAGTACCTGTGACCAAAGTTTCAAATGGAATTCAGATTTTATTAAGCATCAGAGAATTTATGCTGGAGAAAAAATTCACCCATATGGGAAGTCTCTCAAGAACCCAAACCTTATTAAACATGCAGCAGTTTTCACTGGCGAGAAGACCCATCAGTGTAATGAGTGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031874_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.574 C2=0.215
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=68.6)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=8.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGCACTGATGAAGCTGT
R:
ACTGAAAGCAGCATCCTGAGC
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development