MmuEX1028413 @ mm10
Exon Skipping
Gene
ENSMUSG00000051469 | Zfp24
Description
zinc finger protein 24 [Source:MGI Symbol;Acc:MGI:1929704]
Coordinates
chr18:24009702-24018168:-
Coord C1 exon
chr18:24017668-24018168
Coord A exon
chr18:24017322-24017431
Coord C2 exon
chr18:24009702-24014685
Length
110 bp
Sequences
Splice sites
3' ss Seq
AACTGAACTCTTGTTTTCAGGTT
3' ss Score
7.96
5' ss Seq
CAAGTGGGC
5' ss Score
2.69
Exon sequences
Seq C1 exon
AGTACTTTTGAGGAAAACAGGGTATTTCTCTGAGGTGTATACCTTGCCTCCATTGCCTTTTCTTGAAGTACTGTAACAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGATGGTGAAGAGGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGGTTTTCCGGCAGCGCTTCAGGCAATTTGGATACCAGGATTCACCAGGACCTCGAGAGGCGGTGAGCCAGCTCCGAGAACTTTGCCGCCTGTGGCTCAGACCAGAGACACACACAAAGGAGCAGATACTGGAGCTGGTAGTTTTGGAGCAGTTTGTTGCCATCCTACCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCACCCAGAGAATGGAGAGGAGGCAGTGGCTGTTCTAGAGGACTTGGAGAGTGAGCTTGATGACCCTGGTCAGCCG
Seq A exon
GTTTCTCTCCGTCGGCAGAAACGGGAAGTGCTTGTAGAAGAGATAACATCTCAAGAAGATGCTCAGGGATTACCGAGTTCTGAGCTGGATGCTGTAGAGAACCAGCTCAA
Seq C2 exon
ATGATGATGCCACGACAGAAAATGGAGCACTGGCTCCCAAGCAGGAGATGGCTTCAGCTGGAGAGTCTCATGAAGGCCCCGGCACTCTCAACATAGGTGTTCCCCAGCTTTTTAAATATGGAGAAACCTGTTTTCCCAAGGGTAGGTTTGAAAGAAAGAGAAATCCTTCTAGAAAGAAACAACACATATGTGATGAATGTGGGAAACACTTCAGTCAGGGCTCCGCCCTCATTCTTCATCAGAGAATCCACAGTGGCGAGAAACCGTATGGATGTGTTGAATGTGGAAAAGCCTTCAGCAGAAGCTCCATCCTTGTGCAACACCAGAGAGTCCACACTGGAGAAAAACCCTACAAATGCCTTGAATGTGGGAAAGCTTTTAGCCAGAATTCTGGGCTCATTAACCATCAGCGTATCCACACTGGGGAGAAACCTTACGAGTGTGTGCAGTGTGGGAAATCCTACAGTCAGAGCTCAAACCTCTTCAGACATCAGAGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051469-'8-6,'8-5,9-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.480 C2=0.196
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGCTTGATGACCCTGGT
R:
GCCCTGACTGAAGTGTTTCCC
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types