BtaEX6091574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010255 | ZNF24
Description
Bos taurus zinc finger protein 24 (ZNF24), mRNA. [Source:RefSeq mRNA;Acc:NM_001205479]
Coordinates
chr24:22027710-22031048:+
Coord C1 exon
chr24:22027710-22028208
Coord A exon
chr24:22028440-22028587
Coord C2 exon
chr24:22030510-22031048
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACCAATTCTACCATTTCCAGGTT
3' ss Score
8.01
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GAGTGCCTGTGAAGAAAACTGGGTATTTCCCTAAGGTATCTTGCCTTGATTGTCTTTCCTTGAAGTATTACAAATCAGGATGTCTGCACAGTCAGTGGAAGAGGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTAAGAGTGAAGTTGGAGGAGGATCCTGATGGTGAAGAGGGGTCGAGTATCCCCTGGAACCATCTTCCTGACCCGGAGGTTTTCCGCCAGAGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGGGAAGCTGTGAGCCAGCTTCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACACACACAAAAGAACAAATCTTGGAGCTGGTTGTACTGGAGCAGTTTGTTGCCATCCTTCCCAAGGAGCTACAGACTTGGGTTCGAGAGCATCATCCAGAGAATGGAGAGGAGGCGGTGACAGTCCTGGAGGATTTAGAGAGTGAACTAGATGACCCTGGACAGCCA
Seq A exon
GTTTCTCTTCGGCGACGAAAACGGGAAGTGTTAGTGGAGGAGATAGTATCTCAAGAAGAAGCTCAGGGATTACCGAGTTCTGAGCTTGATGCTGTGGAAAACCAGCTCAAGTGGGCATCCTGGGAGCTCCATTCCCTAAGGCACTGTG
Seq C2 exon
ATGATGATGCTAGGACTGAAAATGGAGCTCTAGCTCCAAAGCAGGAGATTCCTTCAGCAGGAGAGTCTCATGAAGTTCCCGGCACTCTCAATATAGGTGTTCCTCAAATCTTTAAATATGGAGAAACCTGTTTCCCTAAGGGCAGATTTGAAAGAAAGAGAAATCCCTCCCGAAAGAAACAGCATATATGTGACGAATGTGGGAAACACTTCAGTCAGGGCTCAGCCCTTATTCTTCATCAGAGAATCCACAGTGGGGAGAAACCCTATGGATGTGTTGAGTGTGGGAAAGCATTCAGCAGGAGTTCCATCCTCGTGCAGCACCAGAGAGTCCATACTGGAGAAAAACCTTACAAATGTCTCGAATGTGGAAAAGCCTTTAGCCAGAATTCTGGGCTTATCAATCACCAGAGAATCCATACTGGGGAAAAACCTTATGAATGCGTTCAGTGTGGGAAATCCTATAGTCAAAGCTCAAATCTTTTTAGACATCAGCGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010255-'3-5,'3-1,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.100 C2=0.184
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAGATGACCCTGGACAGCC
R:
GCCCTGACTGAAGTGTTTCCC
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]