HsaEX0074579 @ hg38
Exon Skipping
Gene
ENSG00000186814 | ZSCAN30
Description
zinc finger and SCAN domain containing 30 [Source:HGNC Symbol;Acc:HGNC:33517]
Coordinates
chr18:35251058-35264455:-
Coord C1 exon
chr18:35263945-35264455
Coord A exon
chr18:35263513-35263657
Coord C2 exon
chr18:35251058-35254381
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGGTACTTGATTACTCCTAGGAC
3' ss Score
5.5
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGAGTTGGAATTCAGAAGGAATCTCTCAGACGCAAATCTCCATCTCCTCCCTGCCTCACCTGGGCAGCCTTTTCAGACTGTCTCTGCCCAGAATGTCAGGAGAGGCCACAGTCTTGGCCTACCATGCTCCAGAAGAACAGGAAGGACTTCTAGTTGTCAAGGTTGAAGAAGAAAATTATGTTTTGGACCAGGACTTTGGCCTTCAGGAAAACCCCTGGAGCCAAGAGGTATTCCGGCAGAAGTTCAGGCAGTTTAGTTACTCTGACTCCACTGGCCCTCGGGAGGCTCTGAGCCGGCTGCGAGAGCTTTGCTGTCAGTGGTTGAGGCCGGAGGTGCACTCCAAGGAGCAGATCCTGGAGCTGCTGATGTTGGAGCAGTTCCTGGCCATCCTTCCTGAGGAGCTGCAAGCTTGGCTGCGAGAGCATCGGCCAGAGAATGGAGAGGAAGCTGTGACTATGCTGGAGGAGCTGGAAAAAGAACTGGAGGAGCCAAGGCAACAG
Seq A exon
GACACAACTCATGGCCAAGAAATGTTCTGGCAGGAAATGACATCCACAGGAGCACTGAAGTCTCTGTCTCTGAATAGCCCGGTGCAGCCCTTAGAGAACCAGTGCAAGACTGAGACTCAGGAGTCCCAGGCTTTCCAGGAGAGAG
Seq C2 exon
ATGGCAGGATGGTGGCTGGCAAAGTGTTGATGGCAAAGCAAGAAATTGTTGAATGTGTAGCCTCAGCAGCTATGATATCGCCGGGAAAACTTCCTGGAGAAACACATTCCCAACGGATAGCTGAAGAAGCTTTGGGAGGTCTGGACAACTCTAAGAAGCAAAAGGGAAATGCTGCAGGGAACAAAATCAGTCAGCTTCCTTCCCAGGACAGACATTTCAGTCTGGCAACCTTCAACAGAAGAATCCCCACAGAACACAGTGTCCTTGAATCTCATGAGAGTGAAGGAAGTTTCAGTATGAATTCAAATGATATTACACAACAGAGCGTTGACACTAGGGAAAAGCTCTATGAGTGCTTTGACTGTGGGAAGGCCTTTTGCCAGAGCTCAAAGCTGATTAGACATCAGAGAATTCATACTGGAGAGAGACCTTATGCATGTAAAGAATGTGGCAAAGCCTTCAGTTTGAGCTCAGACCTTGTTAGACATCAGAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186814-'10-24,'10-13,13-24
Average complexity
C1
Mappability confidence:
94%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.777 C2=0.297
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=8.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACTCCAAGGAGCAGATC
R:
CCGGCGATATCATAGCTGCTG
Band lengths:
252-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development