Special

HsaEX0074579 @ hg19

Exon Skipping

Gene
ENSG00000186814 | ZSCAN30
Description
zinc finger and SCAN domain containing 30 [Source:HGNC Symbol;Acc:33517]
Coordinates
chr18:32831032-32844419:-
Coord C1 exon
chr18:32843909-32844419
Coord A exon
chr18:32843477-32843621
Coord C2 exon
chr18:32831032-32834345
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGGTACTTGATTACTCCTAGGAC
3' ss Score
5.5
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGAGTTGGAATTCAGAAGGAATCTCTCAGACGCAAATCTCCATCTCCTCCCTGCCTCACCTGGGCAGCCTTTTCAGACTGTCTCTGCCCAGAATGTCAGGAGAGGCCACAGTCTTGGCCTACCATGCTCCAGAAGAACAGGAAGGACTTCTAGTTGTCAAGGTTGAAGAAGAAAATTATGTTTTGGACCAGGACTTTGGCCTTCAGGAAAACCCCTGGAGCCAAGAGGTATTCCGGCAGAAGTTCAGGCAGTTTAGTTACTCTGACTCCACTGGCCCTCGGGAGGCTCTGAGCCGGCTGCGAGAGCTTTGCTGTCAGTGGTTGAGGCCGGAGGTGCACTCCAAGGAGCAGATCCTGGAGCTGCTGATGTTGGAGCAGTTCCTGGCCATCCTTCCTGAGGAGCTGCAAGCTTGGCTGCGAGAGCATCGGCCAGAGAATGGAGAGGAAGCTGTGACTATGCTGGAGGAGCTGGAAAAAGAACTGGAGGAGCCAAGGCAACAG
Seq A exon
GACACAACTCATGGCCAAGAAATGTTCTGGCAGGAAATGACATCCACAGGAGCACTGAAGTCTCTGTCTCTGAATAGCCCGGTGCAGCCCTTAGAGAACCAGTGCAAGACTGAGACTCAGGAGTCCCAGGCTTTCCAGGAGAGAG
Seq C2 exon
ATGGCAGGATGGTGGCTGGCAAAGTGTTGATGGCAAAGCAAGAAATTGTTGAATGTGTAGCCTCAGCAGCTATGATATCGCCGGGAAAACTTCCTGGAGAAACACATTCCCAACGGATAGCTGAAGAAGCTTTGGGAGGTCTGGACAACTCTAAGAAGCAAAAGGGAAATGCTGCAGGGAACAAAATCAGTCAGCTTCCTTCCCAGGACAGACATTTCAGTCTGGCAACCTTCAACAGAAGAATCCCCACAGAACACAGTGTCCTTGAATCTCATGAGAGTGAAGGAAGTTTCAGTATGAATTCAAATGATATTACACAACAGAGCGTTGACACTAGGGAAAAGCTCTATGAGTGCTTTGACTGTGGGAAGGCCTTTTGCCAGAGCTCAAAGCTGATTAGACATCAGAGAATTCATACTGGAGAGAGACCTTATGCATGTAAAGAATGTGGCAAAGCCTTCAGTTTGAGCTCAGACCTTGTTAGACATCAGAGAATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186814-'1-13,'1-2,4-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.191 A=0.724 C2=0.297
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0202312=SCAN=PU(97.9=69.1),PF0161413=IclR=PU(67.2=30.1)

							
A:
PF0202312=SCAN=PD(0.1=0.0),PF0161413=IclR=PD(29.5=36.7)

							
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.4)

						

					

				








    
Main Inclusion Isoform:
ENSP00000329738





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSP00000372569, ENSP00000392371, ENSP00000465046, ENSP00000470443, ENSP00000470677, ENSP00000472179
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


hg38




Conservation


Mouse
(mm10)
chr18:23970927-23971101 
ALTERNATIVE
MmuEX0054061
(Zscan30)
Mouse
(mm9)
chr18:24129428-24129602 
HIGH PSI
MmuEX0054061
(Zscan30)
Rat
(rn6)
chr18:15873051-15873225 
Cow
(bosTau6)
chr24:22080770-22080908 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGCACTCCAAGGAGCAGATC

				
R: 
CCGGCGATATCATAGCTGCTG

				
Band lengths: 
252-397

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development






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