HsaEX0073586 @ hg19
Exon Skipping
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:18818]
Coordinates
chr18:32823116-32838013:+
Coord C1 exon
chr18:32823116-32823257
Coord A exon
chr18:32834196-32834366
Coord C2 exon
chr18:32837892-32838013
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCTTTTGCTTCTTAGAGT
3' ss Score
9.4
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAAGTG
Seq A exon
AGTTGTCCAGACCTCCCAAAGCTTCTTCAGCTATCCGTTGGGAATGTGTTTCTCCAGGAAGTTTTCCCGGCGATATCATAGCTGCTGAGGCTACACATTCAACAATTTCTTGCTTTGCCATCAACACTTTGCCAGCCACCATCCTGCCATCTAAAAATGTGAATAGAAAGT
Seq C2 exon
ATTTTTCCTGAAGAACACATCGTCAATAAATCACCTGCACCCAAATCTCCATCTCAGGCGCTACTTCTGGCAAGGCATATCATGAGGCTAGTGAAGCACCTACAAGAAACTTATAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812_MULTIEX1-3/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAGCTAGTCCACAGGG
R:
AGTTTCTTGTAGGTGCTTCACT
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)