HsaEX0073585 @ hg19

Exon Skipping

Gene

ENSG00000186812 | ZNF397

Description

zinc finger protein 397 [Source:HGNC Symbol;Acc:18818]

Coordinates

chr18:32823116-32834366:+

Coord C1 exon

chr18:32823116-32823257

Coord A exon

chr18:32825226-32825315

Coord C2 exon

chr18:32834196-32834366

Length

90 bp

Sequences

Splice sites

3' ss Seq

TTTGCTACTTATTGTTTCAGATT

3' ss Score

9.03

5' ss Seq

TTAGTGAGC

5' ss Score

2.31

Exon sequences

Seq C1 exon

GTCCCAGCTAGTCCACAGGGACCAGCAGTGCCATGGAAGGATTTAACATGTCTCAGAGCATCCCAAGAGTCAACAGACATCCACCTCCAGCCCTTAAAGACACAGCTGAAATCCTGGAAACCATGCCTTTCCCCTAAAAGTG

Seq A exon

ATTGTGAGAACAGTGAAACAGCAACAAAAGAGGGCATCTCAGAAGAAAAATCACAGGGACTCCCTCAGGAACCTTCATTTCGAGGAATTA

Seq C2 exon

AGTTGTCCAGACCTCCCAAAGCTTCTTCAGCTATCCGTTGGGAATGTGTTTCTCCAGGAAGTTTTCCCGGCGATATCATAGCTGCTGAGGCTACACATTCAACAATTTCTTGCTTTGCCATCAACACTTTGCCAGCCACCATCCTGCCATCTAAAAATGTGAATAGAAAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000186812_MULTIEX1-1/3=C1-3

Average complexity

S*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.186 A=0.272 C2=0.026

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(0.1=0.0)

A:

PF079757=C1_4=WD(100=15.7),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.4),PF0009621=zf-C2H2=WD(100=6.6)

C2:

NO

Main Inclusion Isoform:

ENSP00000261333