HsaINT0187120 @ hg19
Intron Retention
Gene
ENSG00000186812 | ZNF397
Description
zinc finger protein 397 [Source:HGNC Symbol;Acc:18818]
Coordinates
chr18:32834196-32838397:+
Coord C1 exon
chr18:32834196-32834366
Coord A exon
chr18:32834367-32837891
Coord C2 exon
chr18:32837892-32838397
Length
3525 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTTCTCTCTCTCCATTACAGATT
3' ss Score
11.93
Exon sequences
Seq C1 exon
AGTTGTCCAGACCTCCCAAAGCTTCTTCAGCTATCCGTTGGGAATGTGTTTCTCCAGGAAGTTTTCCCGGCGATATCATAGCTGCTGAGGCTACACATTCAACAATTTCTTGCTTTGCCATCAACACTTTGCCAGCCACCATCCTGCCATCTAAAAATGTGAATAGAAAGT
Seq A exon
GTAAGTATCATTTACTTCCCATGACAGAAGAAACTGTTGTAGCAGGAACACAAACTCAATGAAATAGGTATTTATTTATTAGGAGGACAGTTCTCAAAACTAGATTCCCAATCTAGAATTCAGAGAAGTGGCCTGGGGTAGCCAAATATGGCCCCCTTGGAGAGTAAGGTAGACAAAGAAATGAATTAGTATTGGAGAAGAGGGATGGTGAACAAGGAAAGACATTAGTTAGAGGGAATGGTGACAAACAGGAATATTGGCGATAAACCAGGAAGCTAGGAGACAATCTTGGGTTAGAGAAGATACGTTTTTAGGTAATGAGATAATCAGGAAAAAAAAGTTAAAAGGAATGATCAGGATAAAGAAAGATATCTAAGAGTCTTAAATCTGTGGTCTTCTATCAATATAGGAGAGCAGAAGATATGATTAGGAAATGCTTTGGGAGTTAGCACTGAACAGAGGTAGCTGGGCAGCAACTAGAAAGCATTAAGGCAATTTCAGATTCTGATAGGTTCCAAATGAATTAAATAATTATAAGCAAATAGAATAAGACACAGACCCAGAGAAAAGAAATACAGGTTCCTGACTCATTCTCAGGTCAGGTGGGAATTTTTTTTAACTTTAAAAAAAATTTTGCACTTAAATCATCCATGGAATACAAAAGAATCTTATAGTTTTACTTTTTAAAATGTATAAGTATCAAAGAAGGGGATGGAGACAACTCCTTCTTTGAGCATTTATACCTAAAAACATGACTGCCCAGAGCCAGACCTTCTGGCTCTCACAAAACATGCCCCATCTCTAGTAGTCTCCTGTTATGAGTTACTGGAAATCTCTCTAGATAACTACAGTAACTCATAACAGAAGGCTACTAGAGATGGGGCATATTATGTCAGCCATCTACTAGTTATATCTAGAGATTTCTAGTAACTAGAAATGGCTGATATAACTTGAATTATTTTATTCTGAAAAATACATCTTCCCAAAAGCCCTCTAAATGTATATGCATTTTACATATCAGGAAACTGAGGCTCAGAGAAGCTAAGTCTGGCCATAGAAGTAATAATTGCTAAGAGTTAGGATTCAAATAAACATTCTTAACATCAAAACTTGTAATCTTTATGCTATCTGCCTTCCATATTGGAAGGATGCAGGGCTGTAGTTGCACTGAAACAAAATATAACTTAAAAATCATTTAAATTTGGCTTTGGAAAAGCATTATGCTTTTATATAAAAATGAATACCTATTTCTGATATTAAGTTCACAACACTTCAAACACAACAATAAAGCACCACAATTGATACCTGATCAAAGCAGAGGGTTGTCTGGCTTCCCGTTTTCCCCATTCCTTACCAGAAATTAAACACAGATGACATCACCTCTAAAATTCATATTGTCCTTGGATTTTAGATAGAAATTTAAATTATTCATTGTTTCATTCAAAAAGAAAACATTTATGAAAAATATACTTGCATACAATAGAGGCATAAAAATTAAAAGTACCAAATAGGTTAAAGTCAGAGACCCAACAACCTAATGAGAAATTTTCTGAAAGTAATAAATAGGTCAAATTATTAAGAGCATCAATTATAGGGTATAAAGTGGCAATATAATTGTGTAGGGACAAAATTAAGGGCAATGAAAATTAGAAAAGCAATGTAACTTATGGGATTTAAATACGTCTTCAAATTCTGTAACTATATGAAGTCAAATTATGAGACTAGAGAAAAATTTTGTCCTCAGATGTATACATCAGGAAGACATCAAGATTTTTATTTGTTCAACTATACATTTATTATTATATTTAAAAAGTTGGAATAAATAGCTAACTAGAGTAATTCTTAGAAAAGACAAATAGAGATTACAAGTAGAGACTGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTTGGAGGCTGAGGCAGGCAGATCGCTTGAGGCCAGGGGAGTTCAAAACCAACTTGGCCAACATGGCAAAACCCCATCTCTACTAAAAGTATAAAAAATTAGCCAGGCATGGTGGTGCACGCCTGTAATACCAGCTACTCGGGAGGATGAGGCACGAGAATCACTTGAACCAGGGACGTGGAGGTTGCAGTGAACCAAGATCACACCACTGCATGACAGAACAAGACTGTCTCAAAAAGAAAAAAAAAAAGATTACAATAAGAAATGGTCACTTGATTATTCAGAAATACTTGCATAGAGAGAACCCAATTACTATCTCCCAAGAATGAAAACTAATTTGTAATCAGGCTCAAGTCTGGAGGCTGGAGGGTGGGGTACAGATTTATAAGAGGCTCTTTGGAGGAGAAATAAGGCACAGGTATCTCTGTTAGAAGAGCTCTTCTGTTTTTGTTGTTGTTGTTGTTGTTTGTTTGTTTTTGAAACAGAGTCTTGCTCTGTCACTCAGGCTGGAGTTCAGTGGTACAATTATCAGCCACTGCAGCCTTGAAATCCTGGACTCAAGGGATCCTCCCACCTCAGTCTCCCCAGTAACTAAGAGTACAGGTGCGCATCATTGCATCCAGTTAATTAAAAAATTTTTTTTGTAGACACGGGGTCTTGCCATGTTGCCCAGACTGGTCTTGAACTCCTGGTCTCAAGCAATCCTCCTGCCTCAGCCTCCCAAAGTGATGGAACTACAGGCACGAGCCACCACACCCAGCTAGCTTTTCTCTTTAACACACCTCCTGCTTTTCTTACTTGTTCTCTGGGGTGGCTCCTCAGTGAGTTCTGCCAGCTCAGCAGTTCAGTGAGCAATTCCATCCTGTTTAGTTTAAAATCCTTTTAACTAGGGATGTGGCCTTCAATTGCATATTGACGAGTATGCTTTTAGCCTTAATGCTATGTCAGTGATGCTCCACTGCCCACCCAGTTCCCCTTTACCAATATGATGCCTCCTTCCCTCAGCCACTGTGAATGTTGGCTCCTCCAATGATGTGAATGTCTGTGTCTCCCCAAAATTCATATGTTGAAGTCCTAACCCCCAAGGTGATGGTATTAGGAAGTGCGGACCTTTGGAAGGTGACTAGGTCATGAGGGCTTAGTGATCTTATAAAATAGGCCCTATGGTGCTCATTTGCCCCTTCCACCACGTGAGGACACAGTGAAAAGGTGCCATCCATGAGAAAGTGGGACCTTACCAAATACAAAATCTGCTAGCACCTTGAACTTCTCAGCCTCCAGAACTGTGAGAAGTAAATCCGTGTTGTTTACAAGCCACTCAGTTGATGGTATTTTGTTATAGCAGTCCTAACCGATTAAGACAGCTCCTAACTATACAGAGATGCCTCCTTCTGTGGAGAATTACCCAGGCTGATGAGAGCCACTTGGCCCAGGAAGTAACTTCCACCTTCATTGCCCCATCTCTGCGTCAAGAAGAGACAACTCTGCAGTGCAATTATGCTTCAGCGGCCCATGAAATGCTCCAAGGATTAGACCAAGCCTAGACTGTAACTGAGACCACATCATTGCTTGCTCTTTTCCCTTCCTAATCCTGCTTCTCTCTCTCCATTACAG
Seq C2 exon
ATTTTTCCTGAAGAACACATCGTCAATAAATCACCTGCACCCAAATCTCCATCTCAGGCGCTACTTCTGGCAAGGCATATCATGAGGCTAGTGAAGCACCTACAAGAAACTTATAACTCAAGGTTGTAAAAATGGCATGGTGACTCTTACAATCATATCACAGTGGGCCTCTCCAACAATTTAAACCTCATGACCTAGGTGAAAGCTGTGAAAGGATCCACATTAATTCTTCAGAGGCAGGGCTAAGACTTTCAAGACTGAAAAGAGACTAGCATAAGGAGACTTAACAGGAACCCAGTCAAGGCCATTCATGGCCATGGGACCACGCATAAATGGAGAACGAGTAAATTTTGCTAAGTCCAAGGACATTGGAGAGATAGAGTCACTATTACTGATATGGTGACTGAGTCAACAACATACTGCCACTATGAAGTAATAAGAAAATAAAAAGTTAAAAAATGTAACAGATAACAGTTGGAGGGTGAATATATTTTAAATCAATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186812-ZNF397:NM_032347:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)