MmuEX0054061 @ mm9
Exon Skipping
Gene
ENSMUSG00000024274 | Zscan30
Description
zinc finger and SCAN domain containing 30 [Source:MGI Symbol;Acc:MGI:2685600]
Coordinates
chr18:24124234-24130346:-
Coord C1 exon
chr18:24129883-24130346
Coord A exon
chr18:24129428-24129602
Coord C2 exon
chr18:24124234-24124334
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACTGGTACTTGTTACTCTAGGAC
3' ss Score
7.49
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGGTTCTTTGGATCCACCTCCTCTCTGCCTCAGCCTTTCAGATTATTCTGACCAGGATGTTCAGAGAAACAACAGCCTTGGCCTGTCATGCTTCAAAAGGACAAAATAGGCTCAACTTTGTGAAAGTTGAAGAAGAAAATGGTGTTTGGAAGCAGGACTTAAGTCTTCAGGGAAACCTCCAGAGCCAGGAGGTTTTCCGTCAGCAGTTTAGACAGTTTGGTTACTCTGATTTCACTGGGCCCCGGGAGGCTCTGAACCGACTGCAGAAGCTTTGCCAGCAGTGGCTGAGGCCAGAGGAGCACTCTAAGGAGCAGATCCTAGAATTGCTGGTGCTAGAGCAGTTCATGACCATCTTGCCTATGGAGCTGAAGGCCTGGGTGCAAGAACACAGGCCCAGAAGTGGAGAGGAGGCTGTGACTCTGCTGGAGGAGCTAGAGAGAGAATTTGATGAACCCAAGCACCAG
Seq A exon
GACACAGCTCATGGTCAAGAAATGATCTGCAAAGAAACGACACTCATGGGAACATCAGAGTCTCTAAGTAGTCCACTGCAGTCCTTGGAGAGCCATTGCAAGAGTGAACCCCAGGATCCCCAGATTTTCCATGAGAGAGATGAGGCAACCCTACCATTTAGGGTTGATGATGAAG
Seq C2 exon
ATAGCAAGATGGTGACTGGGAAAATATTGACAGCAAAGCAAGAAATTATTGAATGTGTTGCATCAGTGGCCATGGCATCTCCAGGAAGACTTCCTAGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024274-'1-15,'1-3,4-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.814 C2=NA
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCACTCTAAGGAGCAGA
R:
TGGCCACTGATGCAACACATT
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: