HsaEX6038673 @ hg19
Exon Skipping
Gene
ENSG00000172466 | ZNF24
Description
zinc finger protein 24 [Source:HGNC Symbol;Acc:13032]
Coordinates
chr18:32912176-32920697:-
Coord C1 exon
chr18:32920195-32920697
Coord A exon
chr18:32919793-32919940
Coord C2 exon
chr18:32912176-32917734
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCAAATCTTTCTGTTTCCAGGTT
3' ss Score
10
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TGCCTGTGAAGAAAACGGGGTATTGCCCTGAGGCTTATATTCTGCCTCAGTTGTCTTTTCTTGAAATATTATAAATCAGAATGTCTGCACAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAACTCCAGATGAAGAGGAAAAAATTCTGAGAGTGAAGTTGGAGGAGGATCCTGATGGCGAAGAGGGATCAAGTATCCCCTGGAACCATCTCCCAGACCCAGAGATTTTCCGACAGCGATTCAGGCAGTTTGGATACCAGGATTCACCTGGGCCCCGTGAGGCTGTGAGCCAGCTCCGAGAACTTTGCCGTCTGTGGCTCAGGCCAGAGACGCACACAAAAGAACAAATCTTGGAGCTGGTAGTGCTGGAGCAGTTTGTTGCCATCCTACCCAAAGAGCTACAGACTTGGGTTCGAGATCATCATCCAGAGAATGGAGAGGAGGCAGTGACAGTGCTGGAGGATTTGGAGAGTGAACTTGATGACCCTGGACAACCG
Seq A exon
GTTTCTCTCCGTCGACGAAAACGGGAAGTACTAGTAGAAGACATGGTATCTCAAGAAGAAGCTCAGGGATTACCAAGTTCTGAGCTTGATGCTGTGGAGAACCAGCTCAAGTGGGCATCCTGGGAGCTCCATTCCCTAAGGCACTGTG
Seq C2 exon
ATGATGATGGTAGGACTGAAAATGGAGCACTAGCTCCAAAGCAGGAGCTTCCTTCAGCATTAGAATCCCATGAAGTTCCTGGCACTCTCAATATGGGTGTTCCTCAAATTTTTAAATATGGAGAAACCTGTTTCCCCAAGGGCAGGTTTGAAAGAAAGAGAAATCCCTCTCGAAAGAAACAACATATATGTGATGAATGTGGAAAACACTTCAGTCAGGGCTCAGCCCTTATTCTTCATCAAAGAATTCACAGTGGGGAGAAACCTTATGGATGTGTTGAGTGTGGGAAAGCATTCAGCCGAAGTTCCATTCTTGTGCAACACCAGAGAGTCCACACTGGAGAAAAACCTTACAAATGTCTTGAATGTGGGAAAGCCTTTAGCCAGAATTCGGGGCTTATTAATCATCAGAGAATCCATACTGGGGAGAAACCTTATGAATGCGTTCAGTGTGGGAAATCGTATAGTCAAAGCTCAAATCTTTTTAGACATCAGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172466-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.340 C2=0.184
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGATGACCCTGGACAACCG
R:
GCCCTGACTGAAGTGTTTTCCA
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)