RnoEX0101147 @ rn6
Exon Skipping
Gene
ENSRNOG00000016562 | Zfp24
Description
zinc finger protein 24 [Source:RGD Symbol;Acc:727963]
Coordinates
chr18:15914399-15919120:-
Coord C1 exon
chr18:15918621-15919120
Coord A exon
chr18:15918244-15918391
Coord C2 exon
chr18:15914399-15915136
Length
148 bp
Sequences
Splice sites
3' ss Seq
AACTCAAATCTTGTTTTCAGGTT
3' ss Score
8.16
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GAGTACTTTTGAGGAAAACAGGGTATTTCTGAGGTCTGTACCTTGCCTCAGTTGCCTTTTCTTGGAGGTATTGTAACAGGATGTCTGCCCAGTCAGTGGAAGAAGATTCAATACTTATCATCCCAAATCCAGATGAAGAAGAAAAAATTCTGAGAGTGAAACTAGAGGAGGATCCTGACGGTGAAGAAGGATCGAGCATTTCCTGGAACCATCTCCCTGACCCGGAGATTTTCCGGCAGCGGTTCAGGCAGTTTGGATACCAGGATTCACCAGGACCGCGAGAGGCGGTGAGCCAGCTCCGAGAACTGTGCCGCCTGTGGCTCAGACCGGAGACGCACACGAAGGAGCAGATACTGGAGCTGGTGGTTTTGGAGCAGTTTGTCGCCATCCTCCCCAGGGAGCTACAGACTTTGGTTCGAGAGCATCACCCAGAGAACGGAGAGGAGGCAGTGACTGTTCTAGAGGACTTGGAGAGTGAACTTGATGACCCTGGACAGCCG
Seq A exon
GTTTCTCTCCGTCGGCGGAAACGGGAAGTACTTGTAGAAGAGATAGCATCTCAAGAAGACGCTCAGGGATTACCGAGTTCTGAGCTTGACGCCGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAACTCCACTCTCTGAGGCACTGTG
Seq C2 exon
ATGATGATGCTACGGCAGAGAATGGAGCCCTGGCCCCAAAGCAGGAGATCGCTTCAGCGGGAGAGTCTCACGAGGTTCCTGGCACTCTCAACATAGGTGTTCCTCAGATTTTCAAATATGGAGAAACCTGTTTTCCCAAGGGCAGGTTTGAAAGAAAGAGAAATCCTTCCAGAAAGAAACAACACATATGTGACGAGTGTGGGAAACACTTCAGTCAGGGCTCTGCCCTTATTCTTCATCAGAGAATCCACAGCGGGGAGAAGCCTTACGGATGTGTCGAATGTGGGAAAGCCTTCAGCAGAAGCTCCATCCTGGTGCAGCACCAGAGAGTCCATACTGGAGAAAAACCCTACAAGTGTCTCGAATGTGGGAAAGCCTTTAGCCAGAATTCTGGGCTCATTAACCATCAGCGAATCCACACTGGGGAGAAACCGTATGAATGTGTTCAGTGTGGGAAATCCTATAGTCAAAGCTCAAATCTTTTTAGACATCAGAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016562-'5-6,'5-3,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=0.170 C2=0.168
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGGAGCTACAGACTTT
R:
CTGCCCTTGGGAAAACAGGTT
Band lengths:
254-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]