BtaEX0041121 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006805 | ZNF180
Description
Bos taurus zinc finger protein 180 (ZNF180), mRNA. [Source:RefSeq mRNA;Acc:NM_001075644]
Coordinates
chr18:52636785-52642052:-
Coord C1 exon
chr18:52641932-52642052
Coord A exon
chr18:52638613-52640587
Coord C2 exon
chr18:52636785-52636919
Length
1975 bp
Sequences
Splice sites
3' ss Seq
TCTATTTTGCTTTCTTCCAGACT
3' ss Score
9.55
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
GAGGGAGTGAACTTCAAAATAGTGACTGTGGACTTCACTCAGGAAGAAGAAGGCACTTTGAGCTCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAAAACCACGGGGACTCTTGGG
Seq A exon
ACTTGGCAACTGCACTTGGAAGAAGAGAATCAAGATTGAAGCAGAGCGTTTTTGATGACAAACTATCCCATAGTGTGAAGATAGAAAAGTTGACAAGAGATGATCCTTGGTTATCTTCATGCAAAGAATTTCAGGATTGTAAGGAGCTGTTGGAGAAGCAACAGGAAAAACAAGAGAGACTTTTGAAGGAAGTGACATTTACTCACAGGAATGCCATTACTCATGAGAGAGACTGCAAAAATGATAGCCCTGAGGAGAAGGCTGGTCTGAATTCCAATCTTCTTTCATCACAGATGATACCCATAAGGAACCATTTTCATAAACACGCTTCACATGTTAAAAAATTACATTATAATTCTATGGTAAACACTCATCAGATGATTACTGATACTGAGAAACTCTGTGAAAATAATGAATTTGGAAACCTCCCCCAGAGTATTCATTTTATTCAGTTTACAAGAACTCAAACAGAAGATAAATCCTATGGATTTAGTGACAGTATTCAACCTTTTAACCATGGTACACCCTTAAACATACATGAGAAAACACATGCACAAGGAAGATCCTTTGATTTTAAAGAATGTGGGCAAATTTTGAACCACAGCATATCCCATAACGAACAACAGAGAAACTCCATTGGAGAGAGTCAGTATAAATGTCATAAGACCTCCCAGAGTTCATCCCTTGCTCAAAACATGAGAAATCATTCTGAAGAGAAGCCCTTTGAATGTAATCAGTGTGGAAAATCCTTCAGTTGGAGCTCTCATCTTGTTGCACATCAGAGAACTCATACAGGGGAGAAACCTTATGAATGTAATGAATGTGGGAAATCATTCAGCCGCAGCTCTCACCTTGTTTCCCATCAAAGAACTCATACTGGAGAGAAACCTTACAGATGTAATCAGTGTGGTAAATCCTTTAGCCAGAGCTATGTCCTTGTTGTGCATCAGAGAACTCATACTGGAGAGAAGCCTTACGAGTGCAATCAGTGTGGAAAGTCATTCAGACAGAGCTACAAACTTATCGCACATCAAAGAACTCATACTGGAGAGAAGCCCTACGAATGTAATCAATGTGGGAAATCATTTATCCAGAGCTATAAACTTATTGCCCATCAAAGAATTCATACTGGAGAAAAGCCCTATGAATGCAATCAATGTGGAAAGTCTTTTAGTCAAAGTTACAAACTTGTTGCCCACCAGAGAACTCACACAGGAGAAAAACCCTTTGAATGTAATCAGTGTGGAAAATCCTTCAGCTGGAGCTCTCAACTTGTTGCACACCAAAGAACTCACACTGGAGAGAAACCCTACGAATGTAATGAGTGTGGGAAATCTTTCAACCGCAGTTCTCACCTTGTTATGCATCAGAGAACTCACACTGGAGAAAAACCCTATGAATGTAACCAGTGTGGGAAGTCCTTCAGCCAGAGTTATGTCCTTGTTGTACATCAGAGAACTCACACTGGCGAAAAGCCCTATGAGTGCAGTGAGTGTGGAAAATCCTTCAGGCAGAGTTCATGCCTTACTCAACATCAGAGAACTCATACTGGAGAGAAACCCTATGAATGTAATCAGTGTGGGAAAACATTCAGCTTGAGTGCTCGACTTATTGTACATCAAAGAACTCATACTGGAGAGAAACCCTTTACGTGTAATCAATGTGGGAAAGCTTTCATTAATAGTTCTAAACTTATTAGACATCAGGCAACTCATACAGAAGAGAAACCCTATGGATGTAACTAGCCTGGAAATCTTTCAGCAGAGGATATCCCTTCCTCCTTGCCTCCCTTTCTCCCTCACTCTTTCCCTTTCTCCCTTCAGCCCCTCATTCCCTTGTTCCCTCCTTCCATTCCTCCAGGATTACATGTATTGGAAAGAACAAGCATGAAAATAGTGTGTGTGGAAAAAAAGCTTTCCATTAGCTCTCTGTTCAACTGTGTATCTGAAAACTCTTTCTGGAGAAGAAAGAAAAA
Seq C2 exon
ATTTGGTTCACAAGTCTTTCTGGCCCTTGCCCCTAAATCATGAATTCTAATCCTATGGATTATCGTGGACCTGAAAACTCTGATCCTGGAGAGTTACTGAAAAATAGAGTTGAACTGAGAGAGCACAGAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006805_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.179 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.1)
A:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGTGAACTTCAAAATAGTGACT
R:
CTCCATTCTGTGCTCTCTCAGT
Band lengths:
255-2230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development