BtaEX0041120 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006805 | ZNF180
Description
Bos taurus zinc finger protein 180 (ZNF180), mRNA. [Source:RefSeq mRNA;Acc:NM_001075644]
Coordinates
chr18:52638277-52647490:-
Coord C1 exon
chr18:52647416-52647490
Coord A exon
chr18:52641932-52642052
Coord C2 exon
chr18:52638277-52640587
Length
121 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTGTCCTGTTTTAGGAG
3' ss Score
9.48
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GACTCTCTGCTTCCTCAGGAGATTATCATCAAGGTTGAGGGAGAAGATGCCCGGTCACTGGCCGTCCCATCCCAG
Seq A exon
GAGGGAGTGAACTTCAAAATAGTGACTGTGGACTTCACTCAGGAAGAAGAAGGCACTTTGAGCTCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAAAACCACGGGGACTCTTGGG
Seq C2 exon
ACTTGGCAACTGCACTTGGAAGAAGAGAATCAAGATTGAAGCAGAGCGTTTTTGATGACAAACTATCCCATAGTGTGAAGATAGAAAAGTTGACAAGAGATGATCCTTGGTTATCTTCATGCAAAGAATTTCAGGATTGTAAGGAGCTGTTGGAGAAGCAACAGGAAAAACAAGAGAGACTTTTGAAGGAAGTGACATTTACTCACAGGAATGCCATTACTCATGAGAGAGACTGCAAAAATGATAGCCCTGAGGAGAAGGCTGGTCTGAATTCCAATCTTCTTTCATCACAGATGATACCCATAAGGAACCATTTTCATAAACACGCTTCACATGTTAAAAAATTACATTATAATTCTATGGTAAACACTCATCAGATGATTACTGATACTGAGAAACTCTGTGAAAATAATGAATTTGGAAACCTCCCCCAGAGTATTCATTTTATTCAGTTTACAAGAACTCAAACAGAAGATAAATCCTATGGATTTAGTGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006805_MULTIEX1-1/4=C1-2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.195 C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.1)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGATGCCCGGTCACTG
R:
TGAGTAATGGCATTCCTGTGAGT
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development