HsaEX0073119 @ hg19

Exon Skipping

Gene

ENSG00000167384 | ZNF180

Description

zinc finger protein 180 [Source:HGNC Symbol;Acc:12970]

Coordinates

chr19:44979861-44988646:-

Coord C1 exon

chr19:44988572-44988646

Coord A exon

chr19:44983500-44983626

Coord C2 exon

chr19:44979861-44982363

Length

127 bp

Sequences

Splice sites

3' ss Seq

GAATGTGTGTCCTTTTTTAGGAA

3' ss Score

10.85

5' ss Seq

GGGGTAAGA

5' ss Score

7.83

Exon sequences

Seq C1 exon

GATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAG

Seq A exon

GAAGGAGTGAACTTCAAAATTGTGACTGTGGACTTCACACGGGAGGAACAGGGTACTTGGAACCCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAGAACCACAGGGACCTAGTCTCTTGGG

Seq C2 exon

ACTTGGCAACTGCAGTTGGAAAAAAAGATTCAACTTCAAAGCAGAGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAGATAGAAAGGTTTACAAGGGATGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAAAAACAAGAGATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAAGCAGTTATTCATGAGAGAGTCTGCAAAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCCCAGTTATACCCATAAGAAACCATTTTCATAAACATGTATCACATGCTAAAAAATGGCATCTTAATGCTGCTGTAAACAGTCATCAGAAGATTAATGAGAATGAGACACTATATGAAAATAATGAATGTGGAAAACCCCCTCAGAGCATTCACCTTATTCAGTTTACAAGAACTCAAACAAAAGATAAATGCTATGGATTTAGTGACCGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000167384_MULTIEX1-6/6=5-C2

Average complexity

S*

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show structural model

Features

Disorder rate (Iupred):

C1=0.360 A=0.267 C2=0.107

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.1)

Main Inclusion Isoform:

ENSP00000221327