HsaINT0186330 @ hg19
Intron Retention
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:12970]
Coordinates
chr19:44983500-44988646:-
Coord C1 exon
chr19:44988572-44988646
Coord A exon
chr19:44983627-44988571
Coord C2 exon
chr19:44983500-44983626
Length
4945 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GAATGTGTGTCCTTTTTTAGGAA
3' ss Score
10.85
Exon sequences
Seq C1 exon
GATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAG
Seq A exon
GTAGGTTGGGCAAGGCCTCTGTCTTTACACTGAGAAATGTGCATGGCTGGGAAGTGAGTAGAAAGTGAGGAAATAGGCCGGGCGCGGTGGCTGCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAGTTAGCTGGGTGTGGTGGCGGGTGCCTGTAGTCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTTCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAGAAAGAAAGAAAGTGAGGAAATGGAGACAAAAGTGGACAACTTTTTCAAGAAGTTTGGTTATTGTGTGAAAGGTAGAAGAAAGTGAAAACTTCAAGGACTTTTGAGATTGAGGGTTTTTTTTAAAGGGATTGAAAATATTCAATTCAGTTTAAATGATTACAGGAAGGAGTTAGTAGAGGAAAAAAAGTTATTCATCAGGCAACAAGAGAGAAACTATAAAGCACAGTCCTTGGTTAGCACCAGAGAAATTAATTCAGAACATCTTGAATAAATTAGCTCTATATGAGGAGAAGGATTTATATAGGAACAGGAGGTTGAGGGAATTATTTGAAAGCTTGATCTTTCACTGCGAAAAATCAGATGAGCATGATGGTGGGAATTGGAATGGAGAGATGTATGACAAGGGTAGAGAAGGCTTAAAATAGCAATTTTGGATTATGAGAGGAAACAGGCTGCTCCAGTAAATGTAATAGGATTGCTGGTCAATCTGAAAGTTTCATTCAGAGATAGTGGCCATTAATTTATAATACTCTATCCTGCTGCTTTTGTGGATTTTTCCCTGCAGTGGCAATTTGTAGCCCACTTTCCACAGATAGCAGATTGACATTCAGATTCATTTAGTTTTTGTAATTTGCCAGGTCCACTTCCTATGGAGTGGACACTCCAAAGGTCAAGGGAATACTTGAAAGAGAATTTAAAAATACGTCAAGTAGAAAGATTAAAAAGAATGATCCATGAACCTTAAATTGAGTAATTAATATGGAAGTGATAAAGAGCCCACTAAGTAGAAATGAAAAAGAATATAGGCTGGTAGTGGTAATAGTAGACATTTCGGTAGCATAATGGCCTTAAACTTTCAAGGAACAAGAGTAAAGGGAAAAAACTGAGCCAATACAGTGGAGCAATCTGACATTGTAGTGAAACGTGGGCAGTTTTGTATTTGTGATTCAAAAGGTGGAGTGTTTTATGACAATTTCAAGGTCTGGGGTGTCCCCCGAAGAATGAGCTGATGAAGAGCAGCTTCAGAATATGAGACTTGGGTTAGCCATATGAACTGATGACTGAGAACACAGTCATCAGTGTGCAAGCTTGAGGTTTTATCCCTCTACTACTAACCTTAGGCATATGTCTTAATTTCTCTGACTCCCTTGGTCTTCATAAGAAAAAAATAGTACTGCTAATAGTGTTTTCTCACAGGAGCCCTTTGAGAATTAAATGAATAATCCATATGACATGTTAGCACAATGCCTGGCACCATGGTGGTGCTTCATGCAAACTCATAAGTGCTTCATTAAAGTCAGTTATTTTTATATTCTCATCAGCTGACTATACAAGTGGATGCTATAGACAATATGAGATAAGACACTACAAGTTCTTATATTAGAGGATAAATCCCAAGTATGAATCTTCAGTGAATGGGGTGGGGGTGGTGTTCAGGAGGTGGGTAGGACAGAGCTCCAAGAAGTGAGGTAAATGGCATGAGTTTCAGAGTAACTGGGAGGACATGCATTCCTTCTTTGATGCTGAGATCTAGGATGGGAGAGTATGAGCATTCTTAGCCTCTGAGGACTGAGGAGGAGGGAAGTCATCAGCAGGAAGTATAAGTCTCCATTAACACAGGGATGTATAGGGAATGTTTGGTGAAGGATACTGAAACTGCAATATTTTATTGTTATTATGATTTTGAGACAGGGTCTCACTCCAGTTACCCAGGCTGGACTGCAATGGTGTGATCATGGCTCACTGCAGCCTTGAATTCCGAGGCTCAGGTGATTCTCCAAACCTCAGCCTCCTGAGTAGCTGGGACTATAGGCATGCACCAGCACGCCTGGCTAATTTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAATTCCTGGGCTGAAATGATCCACCCACCTCAGTCTCCCAAAGTGCTGGGATTATAGGCATGAGCCGCCCTACCCATCCTATTTTATTGTTACAAAACATGAGTTTCAAGGGCAGTTGAAGATTTTGGGAAGGAGTTTTCAGGCATGAGGAATTTGGGACAAGTGAGAAGAATAGAATAAGTGGGATAGAAGTCCAGAAAAGCTAGTATCTGCACATTGAGGGGCCTTTTCAAATGGGTATGTGGTACAGCTTGTGAGATTCAGGTGAGGGGGGATGACTTAAATCAATTTGGGTGAGGGTTATTTTGATATCTTAGAAGGTTTATTGATAGTGTTCATTCACTTACTGAAATAATTTGTGAAATATAAATGTAATATCTACTATATATAAACACTATGCTAAGCATTGGAGTTACATTTGCAAACTGTAAATACTTGTCCCTGCCTTCATGGATCATGGCCTAGTGACAGAGATGACCATTCTGCAAATAAGAAAGTGTGATTATAGAAGTCCATGGAACTTTGAGAATATATAGTTGGGAGTGGAGTGGGGGTGCTAATCTAGTTTAGTATTATCTGTTTGACATTTGAACAAGCTTTATACTAAAGAGACCTATATTACACAGAAAGGGGGAGTGTTTATTAAAAAGAAGCATGCATTACAGATTGAAAGACAATACCTTAAAGATTAATGTTAAATACAGGCAGCAGTTGGCGAGTTATTTTTTGAATTTCACGTTGGGCTAACCATGAAAACATTTGAGGTTTCAGTGAAATTTTTAGGCTCAAACTTAGAGGCATATACAGCAATATTTTGCATGTGTTTTCATGGCATTCAGGACCCTGTATCCTATTCATGAACTGCAGCTCAAGAATGCCTGGTCTATTTAAAGAGCCTTTAGTGGCAAGAGGCATTCGACTTCCCCTTGCCTTTGCTGTGCCTGGGTAAGGACAGATCACCCTTAGCACTTCTCTTTTGGATTAAAATTCCTGCCCAGTTATCTTAAGAACAGGCCCTTTCCTGCTTAGAGGAGGCAGCCCAAGAGACCCCATTTATATGGCAGTAATAACAGCAAACGTCTCCTAAAAGGCTCTGCCATGCAGCTGGATATGGATAGAAACAGAACAGTTATTTGAAGACTGAGCGTTCAGAATAAAGGTCACTTTGGCTCTCAGTTAATCTTTGAGGATCCTGAGACCTACTAATCATAACAGTACAGGCTAAGCACCCCTAATCCAAAAATCTGAAATTGTCCAAAATTGGAAGGTTTTGGAGCCCCAGCATAATGCCACAAGTGGAAAATTCTACACTTGACCTCATGCGACCACTCATAGTCAAAACAGTCAAAACTGTTTCATACACAAAATTTTTTTAAAAATTGCATAAAATTACCATTAGGCTATATGTTTAAGGTGTATATGAAACATAAATGAATTTGTGTTTAGACTTGGATCCCATCTTCAAGGCATCTCATGTAAATGCAAATATTTCAAAATCTGAAATCCAAAATTCTTCCAGTCCTAAGTATTTTAGCTATGGGATACTCAGCCCGTAATTGCTGGCCTTCGTTGTTTCATCAGTAAACTCTGCTAGTGGCTTTTCATAGATCATCGTAATTATTCATTCAACCCAATGATTTAGGTATTATTAGGCCTAATAAATAGAAATGGAATAAACTCGCCACGGAAAGACAATTGGGTCAGGTGTGGTGGCTCATCCCTGTAATTCCAGCACTGTGGGAGTCTGAGATGGGAAGATTCCTTGAACACAGGAGTCTGAGACCAGCCTAAGCAATATATTGAGGGTCTGTCTCTACAAAATTTTAAAAATTAGCCAAGCACGGTGATGCACACCTGTAGTCCCAGCTACTTGGGAGACTAGGTGGGAGGATCACTTGAGCCCAGAAGATGGAGGCTGCAGTGAGCCATGATTGTGCCACTGTACTCCAGCCTGGGCAACAGAGTGAGGTCTTGTCTCAAAAGAAAAAAAAAGGACAGATTGTCAGATTAGATGTATTTCTTAAGCAGATATATGCCCTTTATAGGTGAGAAAGCCAAGTCTTTGTATCTTCTACATCCAGTGTTCTTCACCTATACATACTGCTTTTCATCGAGGTCCACATTTCATTTTCTGTCTCATGCATTAGCAAAGTACAGCCTGTGGCTGTTTTTGTAAATAAAGATCTATTGTAATGTAGCCACACCCATTTGTTTATATATTTTCTGTGGCTAATTTCTTGCTATAGCAGCAGAGTTGAGTAGTGTGATAGAGACTGTATGGCTGGCAAAGTGTGAAATATTTACTATCTGGCCTTTGACAGAAAAAAATCAACCACCCCTGTTTCATTAATTTCTTGGGAATTTAGAGGGAATTCCTAAGTGGGAATTCTATATTCACCAGTGCAAAAGTCAGAATAAGCATCCTTTTTAAGGCAGACAAAATAAAATAGTTTATATCAGTTCTTATCTGGTATTCCTCTTTGGAGTTGTAAAAACAGGTCCAGCATCCAAAACCCAAAGAGCTCACCCAGAAGGCACCTGTACATCTTGACTGGAATCTTTTGGGCACTGACAATTTAAGGACAACTCCCCAGGTCACCAATTTTCCTTTTTCCATCTGTCAGACTTTTCCTCCTCCATGAACTTTGGAAGGAAATGATGCCCAGCTGAGCAGGAATGTGTGTCCTTTTTTAG
Seq C2 exon
GAAGGAGTGAACTTCAAAATTGTGACTGTGGACTTCACACGGGAGGAACAGGGTACTTGGAACCCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAGAACCACAGGGACCTAGTCTCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384-ZNF180:NM_013256:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)