BtaINT0164965 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006805 | ZNF180
Description
Bos taurus zinc finger protein 180 (ZNF180), mRNA. [Source:RefSeq mRNA;Acc:NM_001075644]
Coordinates
chr18:52641932-52647490:-
Coord C1 exon
chr18:52647416-52647490
Coord A exon
chr18:52642053-52647415
Coord C2 exon
chr18:52641932-52642052
Length
5363 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAATGTGTGTCCTGTTTTAGGAG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GACTCTCTGCTTCCTCAGGAGATTATCATCAAGGTTGAGGGAGAAGATGCCCGGTCACTGGCCGTCCCATCCCAG
Seq A exon
GTGAGTTGGACAGGGCCTTTGTGTCTTTCGATTGAGAAATGTGCATGGCTGACAGGCAGCAGAAGCCACATTGAAGTGAACTGATTAGAAAATGATTAGAAAATGAGGAAATTGAGATGAATGGATACTTTTTACACAAAGTTGGTTATAATGCAAGGAGAGTGATAACTGCATGGAAACTTGAGAGTGAGTATTGTCATTTTCTTCCCTCTAAAGGTTTGAAAGAATTTGGCTTGGTTTAAATGGTTGCAGGACAGAGTAAGTGAAAAAAAATTCAGGGTCAGGAGAGAGAGAAGCTACAACTATAAAGCAGAACTCACAGATACAAAGAACAAGTGGTTACTAGTGCTGGAGGTGGCGGAAGCTGAGGGGAAGAATTGGGAGGTATAAAGTATGGAGTATAAGACAGGCCTGAGGGTAGATTATACAACATGGGCAATATAGCCAATATTTTGTAATAACTGTAAAGGGAAAGTAACCTTTCAAAATTGTATAAAAATTAAAAATAGCCATTAAAAAAACAGTCCTTGATTAGTGTCAGGGGAATTAATTCAGAACATATGTGAATGCATTGGCTCTGTTAGAGGAAGAAGGGCTCATATAAGAAAAGTGAGGTTGAGGGAATTATTGGAAGGCTTACATTTTTCTCTGTGAACCATCAGATGTTCTGTTGAGCATGAGGGTGGTAATCAGAATGGAGAGATGTTGGATGAAAGTGGAGAAGGCTTAAAGTAGTAACTTGGATTAGGGGAGACAGGCTGCTCCAGGAGGTACAGTGAGGTTTCTGGTCAGTCCCAAAAATTCATTCTGAGATTGTTGTTTGGTCGCTAAGTCGTGTCCAACTCTGCAACTCTATGGACATGCCAGGCTTACCTGTCCTTCAGTATCTCCTGTTGAGTCAGTGATGCTGTCCAGCCATCTCATCCTCTTTGACTCACTTGTCCTCCTGCCCTCAATCTCTCCAAGCATCAGGGTCTTTTCCAATGAGTTGGCTCTTCACATCAGATGGCATTCTGAGATAGTAGCCATTAATAATAATGGAGAGCAGGTTGATATTTAGATGTATTTAGTTACATTCAATGGAAGCCCCACAGCCCACAGGTTTAAGGCAATATTTAAAAGGGAATTTTTGACTATATCAAATAGAAAGATTAAGATGAATGATCCATAGACTCTCAACTGAATAATTAAGATAGAAAAGATAAAAAGGATACTAAACAGAAAGGAAAAGACTATAGACTAGAGAATAGTCATAGTAGGTGTTTCAATAGAATAAAATAAAGAGCTTCTCTAGTGGCTCAGAGGGTAAAGCGTCTGCCTGCAGTGCAGGTAGACCTGGGTTCGATCCCTGGGTTGGGAAGACCCTCTGGAGGAGGAAATGGCACCCCACTCCAGTACCTTTGCCCAGAAAATCCCATGGACGGAGGAGCCCGGTAGGCTACAGTCCATGGGGTTGCAAAGAGTCAGACACGACTGAGCGACTTCATTTTCAATAGAATAAAGACCCCAAACCATCAAAGAATGAGAAGAGTAAAGGGGACAACTGAGCAAGTAAAGTGGAGAAATCTGATGTTGTAATGAAAGAGTGAGCAGTTCTCTGTGTGTGACTTGGGAGGTGGAGTACTTTATGGTGGTTTCAAGATCTAGGGTCTCACGCTAAGAGTGAGGGGCTATAAGTCAGGCTGGCTGTATGAATTGATGACTGAGAACATAGTCTATGATGTTAGGGAAACTTGAAGTTGCATCCCAGTTAGGCATATGTGTTACTTTCTCTAACCTTCTGGCTTTTCATCTGAAAAATGGTGCTGCTAATAGTATTTTCTCAGGGACCTTGTAAGAAATCAATGAACAGTAATTTATGCAGTGGGCTTCTCTGGTGGCTAAAGTGGTAAAGAATCCGCCTGCCAGTGCAGGAGACACAGGTTCACTCCCTGGAGGAAGATCACAGGGATTCAATCCCACAGGAAGGTCACCTGGAGGAAGAAATGGCACCCCCCTCCAGTATTCTTGCCTGGGAAATCCCATGGTGGGCTACAGTCCATGGGGTCAAAAAAGAGCTGGACACAGCGACTGAACAACAAGAACAAATTTATGCAATAGGCTAACACATTACCTGACACCACACAGTAAGTGCTTCATTAGAGTCAGTTATTTTTCTATTATTACCAGAAAACTCTACAAATGGATGCTATAGACCATCCAAGACAAGACAATACAACTTGTTGAATTAGAGGATAAATCCTAGGTGTTATTAATATAAATCTTCAGTGGAATGGAAGGGAGGTGGTGGTCAAGTTATTGGTAGAACAAGGCTCCAAGAAGTGAGGTAAATGGCATGAGTTTCAGGGTTTCTGGGAGGATACACACTCTTTTCCAGCTTTGATGCTGAGACCCCTGGATGGGAGAGCATGACCACCCTGAGCCTGTGAGGTCTGCAGAGGAGGGAGTCCTTGCAGGGAAGTGTAGGTTTTTATTAACTCAGGAATGGGGCATCCCTGATGGGTCAGTGGTAAAGAATCCGCCTGCCAATGCAAGAGACATGTTTGATCCCTAATCCAGGAAGATCCCGTGTGCCACAGAGCAACCAAGCCTATGTGCCACAACTACTGAGTCTGTGCTGTGGAGCCCACATGCCATGACTGCTGAATTCCATGCCATGGCCCTAGAGTCCAAGATTCCACGCTCCACAACAAGAGAAGCCACTGCCATGAGAAGCCCACACACTGCAGCTTTAGAGTGGCCCCCACTTGCTGCAACTACAGAGAAAAACCCACACAGCAATGCAGACCTAGCACAGCCAAAAAAAAGACTACTATACTTATTTAAAAAAAAAAAAAAACAGGGATGCAGAGAGAATATTTGGTGAAGATGTAAGATTTCATTATTATAGAAGAATTCCCAAATTGAAAGGTTTGGGAAGGAATTTTGAGCAGTGAGGAGCTGGGGACAAGTAGATGAAGTATAGAATAAGAAGGGATAGAAGTCCAGAAAAGCCAGTATCCATACTTAAGGGACTTTTTCTAATGAGTATGTGATAAGCCTTGTGAGATTCAGGTGAACAGAGAGGACTTAAATCAGAATTTGAACCAGGATTTTTTTGATGTATTACTAAGTCTATTGATATACTGTTTCACTTACTGAAATAAGTTACCAAATATGTAATTAGTCTGTACTATACACCAATACTGTACTAAGCATAAATAAATACCTTGTCCCTGCCATCATGGATTACAGCCTAGTGACCAAGATGACCACTATGCAAACGATAAGAAAGGGTGGTGGGTCTTATGATAGAAATTCCTGGAACTTTGAGAATATAAAGCTTGACGTGGAGGGGGGGTGATAATCTAGTCTAGTATTATTTATTTGACATTTGAAGAAGTTTGATATTAAAGGGACTACATTAAACACTGAAGAGACATGTTAATTAAAAGGAAGCATGGGGCTTCCTTGGTAGCTCAGTGGTAAAGAATCTGCCTGCCAATGCAGGAGACACAGGTTCTATTTCTCTGGGAAATCCCACATGTGGGCCTGTGAGCCACAACTATTGAGCCTGTGATCTAGAGCCCGAGCCCTGCAACACGACAAGCCACTGCAATAAGAAGCCCAGGCATCGCAACTAGGGAGTAGCCCCACCTCAGCACAACTAGAGAAAAGCCCACACAGCAACAAAGACCTAGTGCAGCCAAAAAATAAGCACATAAATTTATTTTTTTTTAATTTTAAAAAGGAAGCATGGATTGGAAGTTGAAAAACAGTATCTATAGATCCATGTTGAACACAGGGAGCAGTTTTCTGAATCTCATTTTGGGCTCATTATGAAAATCTTTGAGATTTTTAGTGAAAATTATGAGCCATAGCTTAGAAAAATGCAAGTACAGTAGCATTTTGCATCAAGTTTTATGGACTTCAGGGACCTTGTGTCCTATTCATGAACCACAGCTTAAGAACACTCCATCTGTTTTAAAATGTCCTGGCAAGTGGCATTTGACTTCAGTGGCTTTTGCTGCCTTTGGATAAGGACAGATCACATCCAGTACTTTTTTGGAACAAAATTCCTGCCCAATAGTTTTTTTTTTTTAAACTCAATTAAAAATATTTTATTGGAGTGTAGTTTGATTAATCACCAAATAGTCCAAAAAGGTGAAGAAGGAAATGGCAACCCACTCCAGTATCCTTGCCTGGAAAATTCCATGGACAAAGAAGCCTGGTGGGCTGTAGTCCATGGAGTCGCAAAGAGTCGGACACGACTGAGTGATTAAAACACACACACACACACACACATACACATACACACACAGAGTCCTAAAAGGAGGGTTCTTCCTGCTTACAGGAGGCAGCTCAAGAGACCCCCTGTTTACATGGCAGTAATGACAGGCTCTGTGGTGCAGCTCATAGTGTGGGCAAAATAGAACTGTTTTCTGAAGACTAAGAGTTCAGGATAAAGATCTCTCATTGACTGTCATTTAATTTTTCAGTGTTCTCAAACCTAAGCATCCTGATAATTACCAGCCTTTGTTTTTTGTTCAGTAAACTCTGCTAATGGCTTTTTATGTATCATTACAATTTAATTCACTCAACAACATATGAGTTGGGTATGGTTAAGCCTAATAAGTAGAAATGGAATAACCTCACCATTAAGAGACAGTCAGATTAGATACATTTAAAAAAAAAAATCAGACATATGCTCTTAATAGAGGAAAAAACCCAAGTCTCTTTTCCAAATCCAGTGCTCTTAGCTTATACATCCTGCCTTTCATTAAGGCCTACATTTCATTTTCTGTCCCACATTTCATTCTCTGCATCACCAAAGCTGTGTGCCGAATCTGGCCCATCACCTGTTTTTGTAAATAAGGTTTTATTGTAATATACTCACAACCATTTGTTCATATATTTTCTGTGGCTGCTGTCTTGCTATAGCAGCAGAGCTGACTAATTGTAAGAGAGGCTGTATGGCTTGCTAAGCCTAAAATATTTGCTCTCTGACCTTTGACAGTTAAAAATTTGCTGAACCTGTTTTGTTAGTTTCTTGATAATTTGGAGGGAATTCCTAAGTTGGAATTCCATATTCACCAACACAAAAATCAGAATTAGCATTTTCTTTAAGGTCTACAAGAAAGATAACAGTTTGTCATTTCTTTCTGATGTTCCTCTTTGGGGTTATATATAAACAGGTCCAGCATCCAAAACCCAAAGGGGCTTGCCTAAAAGGTACTTGTACCCCTAGAATCTTTTGAATGTTGACTATCTCAGGACTGTTTCCAGGCCATCAGGTTTTCCTTCTTCCATCTGTCAAACTTTTCCTCTCTGAACACTGGAAGGAAATGATACCCAGCTGAGTAGGAATGTGTGTCCTGTTTTAG
Seq C2 exon
GAGGGAGTGAACTTCAAAATAGTGACTGTGGACTTCACTCAGGAAGAAGAAGGCACTTTGAGCTCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAAAACCACGGGGACTCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006805:ENSBTAT00000052471:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development