RnoINT0167815 @ rn6
Intron Retention
Gene
ENSRNOG00000029336 | Zfp180
Description
zinc finger protein 180 [Source:RGD Symbol;Acc:631380]
Coordinates
chr1:80929156-80933372:+
Coord C1 exon
chr1:80929156-80929230
Coord A exon
chr1:80929231-80933248
Coord C2 exon
chr1:80933249-80933372
Length
4018 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAATGTGTGTGCTGTTCTAGGAG
3' ss Score
8.4
Exon sequences
Seq C1 exon
AACTTTGTTCTACCCCAAGAGATGATCATCGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCTTGCCTCAG
Seq A exon
GTGAGTTGGACAAGGCCCACCTTTCACCTGGAGATGTGCATGGTGGTGAGTGGTGGAAGCACACTGAAGGGAACCAGAGGGGGCGGAAGTGAGCGGTGAGTGGGTGGAAGTGGGCGAAGTGTTTGTTGATGTTCAGAGGGCTCAGGTGCAACCCCACAGGTCGTGGTCTGAATATGCTCAGCCCATGAGTGGCACTATTAGGAGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGGAAGTGCATTACTGTGGCTTTGAGACCCTCCTCTAAGTACTTGGAAGACAGTCTGTTCCTTGGCTTCCTTGGCATGAAGATGTAGAACTCTCAATGCCTGAGGGTAATTTTTTTTAAAGATTTATTTATTATATATAAGTACACTGTAGCTGTCCTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTGAGGATAATTTTTTTTAAGAGTCGGTTTTCACTTTTTATCATATGGAATTCAGGGAACAAATTCAGGGTGTAAAGCTTTATAGTAAGTATCCTTTTTTAAAAAAAAAAAAATGATATCTTTTCATTCAGTGTGAATGGGTGTTTTCCTGCATGTGTGTCTGTGTGAGGGCTGCCGAAGATGGAGTTACCGACAGTGCGAGCTGCCATGTGGGTGCTGGGAATTGAACCTGGGTCCTCTGCAAGAACCACTGAGCCACCTTTCCAGCCCCCTCCTTTAAAAAAAAAAAAAAGACATGGTGTCTTTATGATCCCTGACTGACCAGAACCTCAAACTCGCTATTTTCTGAATGCCAAAATGAACGCGTTTGTCATCTTGGCAAGCTGACAGCGAGCATCTTTACCTGCTAAACCAACCCGAGGCCCTTACCTGATATCTACGCGTCTATTAGACAGCAGGGGTGAATAGTTAGTATAGCAAAGCATGGATTTAGAGATTTAAAGACCCTTCCAGACCAGTGTTCAGCCCAGCTGGCAGCTAGTAGCTTGCATTTCTGCATCCAGTTTTAGGCTAATCACTAAAACACCTTTGCAATTCTGGTGAAATTGATGGGCCTGAGAAGAATGCCCAGATGGCAGCACGTTCATGCAGTTTCCTGTGCTTCAACTCCTGTGTCCTGCTCACGGACCACAGCCTCCAAAATCCGGGTCCGCAAATGTCGGGTCAGAACTGTTAGTGGCAAAGACATTCAGTTACTTGGTATTTACTGTTTTGGGCACTTCCTTATGGATCGAAATCCCCATCCATTTTAGCTTCTGCCTCACTTGTTAGAGACCAGCTCTAAGGCTTGTTAGAGCTTCTGTCCTGTTTAAAGCAGTCAGTCCATGAACATTGGTGACAACTTCAATCATAATTGTTGGTGCCAGGGACTTCACATAGGATGCTTGTGTGCAAGATGAGTGCTCTAACCCCCAAGCCACGCCCCCAACCCCCTCACTGGGGGATTCTAGGCAGGGCCTCTACCACTGAGCCACGCCCCCAGCCCCTCCCTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCCCTTACTGGGGGATTCTAGGCAGGGCCTCTACCACTGAGCCACGCCCCCAGCCCCTCACTGGGGATTCTAGGTAGGGGCTCTACCACCAAGTAGAAAGACATATCTCCCTTCTTTCATCTACCTTTAAAGAAGTTTCCTCTGTCTCACACTAGTGAATTTCACATAGGACATCCTCATCCTCCTTATCCTCCAAAACCAAGCAGAACAGGAATGTTTCTTTATTTTGTTCTGTTTCTGTGTCAGTGAGTAAGCGTTTTGGGGTTGTGGTTTATACAGTCTCCTTGCTAGTTGTGCTCTGCTGCTATATAGAAATAAGTCAGTCACCTAAAATACAGTACCCACTGGGCGTGCTAAATTATAATAAACCCATACTTAGAAAACCAGGCATTGGGCTGGATTTACCTGACACCTAGACTTTGCTAATGCCTGAGGCAGAAGATGAAATGCAGACCTTGGTGGGCAGTAGTAGGTATAGCTTAGTGGACCTCGGGGTTACAAGGCAAAGAGACATGGGTTCGTGCGTGCGTGTGTGCATATATGCACATGCACATTTATTTAGGGACCAGAGGTTTACATGAGGTATCTTTCACCACCATTTCCACCTTATTTATTGCGGTAAGACTGCTTACTTATCTGGGTCTCGCTGAATTTAACCAGCTCAGGTAGCTGTCCTGCCCTGGAGATATCCTTCTTTCAGCTTCCAAAGAGCTAGGTTACAGCCCACCATGTCCACCTGGCTTCGTTGTGGCTGCTGGGGTTTGAACTCGGCTCCTCATGCTTGTGTGGTGATTGCTCAGCCTCCTCAGCCTCTGAGAGCTGGGTTTTTCTTACCCACAGGGAGCGAATATGGAGCTTGGGTTTGGCCAGCCAATGGACTGCTTCCCTAGCATGTGTGGAAGACCTCTAGTTAGTCCCTAGCATTGCACGAAACCAGGTGTGAGAGCATTTGGCAGCCTCAGCTACACCATGGGTTTGAAACCAACCTGGACTTTGTGAGAGCTCATCTCAAACAAACTAAAAGGGGGCGTGTGCTGGGGTCTCGGGTGTACTTCGTGTGGGCTGCTTGCCTCACAACGCAGAGCCTGTGTGAACTCCTGCATTAATCAACAAGGAAAACTGGTGTGTATGGGAACTAGAGTCCTGAGAGACCTCATTACACACATGCTGACTCCTGTGTTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAATTCAGGCCACAGCATGTTTGTGGAGGTTAGACTTCTTGGAGGACAGGAAAACTCCCTGGAGTCATTTATCTTTCTCCTCTGTAAGCCTCAAAGTTGTCAGACTTCATGGCAAGTGCCTCTCTCCTCTGATCCATGTCACCAGCCCCAGTAATCCACTGGCCAGGCGATTTTCCAGGAAGCTGCCAAGTTACCAGTTAGCCAGCATGGCAGATTAGCAAGCTCTGTGTCAGCAGGGGAAAGGCAGGAGTCAGCGCCCGAGCCTGTGGCACACGCAGGCTCCTGCTCCTCTGTCACACAGACACATGACGGTAACAAATGGTAAAAATCTGGGGGCTGCAGAGATGGCCCAGTGAATCAGAACACTGCTGCTCCTCTGGAGAACCCAGGTTCAACTCCTAGCATGGCAGCTCACAAGAGTCCTCAACCAATGCCAGGGCGTCTGATGGCCTCTTCCAGCCTCTGCTGGCACTGCCCACATGTGCATATAAATGAATGCAGGCAAAACATCTACTCACATAAAGTAATAAATACAATTATTTATATTATTTCATGTATACGAGTGTCTTGTCTTAATGTATGTTCAGCACACGTGTACCCCTTACCCGTAGAGGTCAGAAGAGGTTGCTGGATCCTCTGGAACTAGAGTTGCAGGTGTTTGTGAGGCACCGTATGTGTGTTGGGAATTGAACCCTGGCCCTCTGCAACAGCAACAAGTGATCTTGACAGTCGCACCATGTCCCCAGCAGTCCCTGAATAACTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAAGCAATCGCTCTACCACTGAGCTAAATCCCCAACCCCCCTGAATAACTTTTTAAAGGCTCGTAACCACTCAGTGTCTAAGCGCTTGCCTAGCGTGTGTGAGGGTCTGAGTTTAGTCTGTACACCGAGTGAGTAAGGAAGTCAGAGAGACTCTGTATGCTTCTTGTTTGATGTTCCTCTTCCCGGGGTAAAAGCAGGCCCAGCATCTGCAGCCCAGCAGGGCTTTTGACCCTAGTTGGCATGCTTTGGATGTAGATGGTCTAAGGATAACTGCCTGGTGGTCAGAGCCCATGGGCACTGAGGAAGAACTGCCAGTGCCCAGCTAAGCAGGAATGTGTGTGCTGTTCTAG
Seq C2 exon
GAGAGCACAGACTTCAAGATTGTGACTGTGGACCTCACGGAGGAGGGACAGAGCACTTGGAGCAAGGCCCAGAGAACCCCAGAGAGACCTGTGACCCTGGCAGGCCCTGGAAGGGACCTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029336:ENSRNOT00000026077:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=NA C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=73.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]