HsaINT0186330 @ hg38
Intron Retention
Gene
ENSG00000167384 | ZNF180
Description
zinc finger protein 180 [Source:HGNC Symbol;Acc:HGNC:12970]
Coordinates
chr19:44479283-44484435:-
Coord C1 exon
chr19:44484361-44484435
Coord A exon
chr19:44479410-44484360
Coord C2 exon
chr19:44479283-44479409
Length
4951 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GAATGTGTGTCCTTTTTTAGGAA
3' ss Score
10.85
Exon sequences
Seq C1 exon
GATTCTTTCCTTCCTCAAGAGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAG
Seq A exon
GTAGGTTGGGCAAGGCCTCTGTCTTTACACTGAGAAATGTGCATGGCTGGGAAGTGAGTAGAAAGTGAGGAAATAGGCCGGGCGCGGTGGCTGCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAAATACAAAAAAAGTTAGCTGGGTGTGGTGGCGGGTGCCTGTAGTCTCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTTCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGTGAGGAAATGGAGACAAAAGTGGACAACTTTTTCAAGAAGTTTGGTTATTGTGTGGAAGGTAGAAGAAAGTGAAAACTTCAAGGACTTTTGAGATTGAGGGTTTTTTTTAAAGGGATTGAAAATATTCAATTCAGTTTAAATGATTACAGGAAGGAGTTAGTAGAGGAAAAAAAGTTATTCATCAGGCAACAAGAGAGAAACTATAAAGCACAGTCCTTGGTTAGCACCAGAGAAATTAATTCAGAACATCTTGAATAAATTAGCTCTATATGAGGAGAAGGATTTATATAGGAACAGTGAGGTTGAGGGAATTATTTGAAAGCTTGATCTTTCACTGCGAAAAATCAGATGAGCATGATGGTGGGAATTGGAATGGAGAGATGTATGACAAGGGTAGAGAAGGCTTAAAATAGCAATTTTGGATTATGAGAGGAAACAGGCTGCTCCAGTAAATGTAATAGGATTGCTGGTCAATCTGAAAGTTTCATTCAGAGATAGTGGCCATTAATTTATAATACTCTATCCTGCTGCTTTTGTGGATTTTTCCCTGCAGTGGCAATTTGTAGCCCACTTTCCACAGATAGCAGATTGACATTCAGATTCATTTAGTTTTTGTAATTTGCCAGGTCCACTTCCTATGGAGTGGACACTCCAAAGGTCAAGGGAATACTTGAAAGAGAATTTAAAAATACGTCAAGTAGAAAGATTAAAAAGAATGATCCATGAACCTTAAATTGAGTAATTAATATGGAAGTGATAAAGAGCCCACTAAGTAGAAATGAAAAAGAATATAGGCTGGTAGTGGTAATAGTAGACATTTCGGTAGCATAATGGCCTTAAACTTTCAAGGAACAAGAGTAAAGGGAAAAAACTGAGCCAATACAGTGGAGCAATCTGACATTGTAGTGAAACGTGGGCAGTTTTGTATTTGTGATTCAAAAGGTGGAGTGTTTTATGACAATTTCAAGGTCTGGGGTGTCCCCCGAAGAATGAGCTGATGAAGAGCAGCTTCAGAATATGAGACTTGGGTTAGCCATATGAACTGATGACTGAGAACACAGTCATCAATGTGCAAGCTTGAGGTTTTATCCCTCTACTACTAACCTTAGGCATATGTCTTAATTTCTCTGACTCCCTTGGTCTTCATAAGAAAAAAATAATACTGCTAATAGTGTTTTCTCACAGGAGCCCTTTGAGAATTAAATGAATAATCCATATGACATGTTAGCACAATGCCTGGCACCATGGTGGTGCTTCATGCAAACTCATAAGTGCTTCATTAAAGTCAGTTATTTTTATATTCTCATCAGCTGACTATACAAGTGGATGCTATAGACAATATGAGATAAGACACTACAAGTTCTTATATTAGAGGATAAATCCCAAGTATGAATCTTCAGTGAATGGGGTGGGGGTGGTGTTCAGGAGGTGGGTAGGACAGAGCTCCAAGAAGTGAGGTAAATGGCATGAGTTTCAGAGTAACTGGGAGGACATGCACTCCTTCTTTGATGCTGAGATCTAGGATGGGAGAGTATGAGCATTCTTAGCCTCTGAGGACTGAGGAGGAGGGAAGTCATCAGCAGGAAGTATAAGTCTCCATTAACACAGGGATGTATAGGGAATGTTTGGTGAAGGATACTGAAACTGCAATATTTTATTGTTATTATGATTTTGAGACAGGGTCTCACTCCAGTTACCCAGGCTGGACTGCAATGGTGTGATCATGGCTCACTGCAGCCTTGAATTCCGAGGCTCAGGTGATTCTCCAAACCTCAGCCTCCTGAGTAGCTGGGACTATAGGCATGCACCAGCACACCTGGCTAATTTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGGTCTTGAATTCCTGGGCTGAAATGATCCACCCACCTCAGTCTCCCAAAGTGCTGGGATTATAGGCATGAGCCGCCCTACCCATCCTATTTTATTGTTACAAAAGATGAGTTTCAAGGGCAGTTGAAGATTTTGGGAAGGAGTTTTCAGGCATGAGGAATTTGGGACAAGTGAGAAGAATAGAATAAGTGGGATAGAAGTCCAGAAAAGCTAGTATCTGCACATTGAGGGGCCTTTTCAAATGGGTATGTGGTACAGCTTGTGAGATTCAGGTGAGGGGGGATGACTTAAATCAATTTGGGTGAGGGTTATTTTGATATCTTATAAGGTTTATTGATAGTGTTCATTCACTTACTGAAATAATTTGTGAAATATAAATGTAATATCTACTATATATAAACACTATGCTAAGCATTGGAGTTACATTTGCAAACTGTAAATACTTGTCCCTGCCTTCATGGATCATGGCCTAGTGACAGAGATGACCATTCTGCAAATAAGAAAGTGTGATTATAGAAGTCCATGGAACTTTGAGAATATATAGTTGGGAGTGGAGTGGGGGTGCTAATCTAGTTTAGTATTATCTGTTTGACATTTGAACAAGCTTTATACTAAAGAGACCTATATTACACAGAAAGGGGGAGTGTTTATTAAAAAGAAGCATGCATTACAGATTGAAAGACAATACCTTAAAGATTAATGTTAAATACAGGCAGCAGTTGGCGAGTTATTTTTTGAATTTCACGTTGGGCTAATCATGAAAACATTTGAGGTTTCAGTGAAATTTTTAGGCTCAAACTTAGAGGCATATACAGCAGTATTTTGCATGTGCTTTCATGGCATTCAGGACCCTGTATCCTATTCATGAACTGCAGCTCAAGAATGCCTGGTCTATTTAAAGAGCCTTTAGTGGCAAGAGGCATTCGACTTCCCCTTGCCTTTGCTGTGCCTGGGTAAGGACAGATCACCCTTAGCACTTCTCTTTTGGATTAAAATTCCTGCCCAGTTATCTTAAGAACAGGCCCTTTCCTGCTTAGAGGAGGCAGCCCAAGAGACCCCATTTATATGGCAGTAATAACAGCAAACGTCTCCTAAAAGGCTCTGCCATGCAGCTGGATATGGATAGAAACAGAACTGTTATTTGAAGACTGAGAGTTCAGAATAAAGGTCACTTTGGCTCTCAGTTAATCTTTGAGGATCCTGAGACCTACTAATCATAACAGTACAGGCTAAGCACCCCTAATCCAAAAATCTGAAATTGTCCAAAATTGGAAGGTTTTGGAGCCCCAGCATAATGCCACAAGTGGAAAATTCTACACTTGACCTCATGCGACCACTCATAGTCAAAACAGTCAAAACTGTTTCATACACAAAATTTTTTTAAAAATTGCATAAAATTACCATTAGGCTATATGTTTAAGGTGTATATGAAACATAAATGAATTTGTGTTTAGACTTGGATCCCATCTTCAAGGCATCTCATGTAAATGCAAATATTTCAAAATCTGAAATCCAAAATTCTTCCAGTCCTAAGTATTTTAGCTATGGGATACTCAGCCTGTAATTGCTGGCCTTCGTTGTTTCATCAGTAAACTCTGCTAGTGGCTTTTCATAGATCATCGTAATTATTCATTCAACCCAATGATTTAGGTATTATTAGGCCTAATAAATAGAAATGGAATAAACTCGCCAGGGAAAGACAATTGGGTCAGGTGTGGTGGCTCATCCCTGTAATTCCAGCACTGTGGGAGTCTGAGATGGGAAGATTCCTTGAACACAGGAGTCTGAGACCAGCCTAAGCAATATATTGAGGGTCTGTCTCTACAAAATTTTAAAAATTAGCCAAGCACGGTGATGCACACCTGTAGTCCCAGCTACTTGGGAGACTAGGTGGGAGGATCACTTGAGCCCAGAAGATGGAGGCTGCAGTGAGCCATGATTGTGCCACTGTACTCCAGCCTGGGCAACAGAGTGAGGTCTTGTCTCAAAAGAAAAAAAAAGGACAGATTGTCAGATTAGATGTATTTCTTAAGCAGATATATGCCCTTTATAGGTGAGAAAGCCAAGTCTTTGTATCTTCTACATCCAGTGTTCTTCACCTATACATACTGCTTTTCATCGAGGTCCACATTTCATTTTCTGTCTCATGCATTAGCAAAGTACAGCCTGTGGCTGTTTTTGTAAATAAAGATCTATTGTAATGTAGCCACACCCATTTGTTTATATATTTTCTGTGGCTAATTTCTTGCTATAGCAGCAGAGTTGAGTAGTGTGATAGAGACTGTATGGCTGGCAAAGTGTGAAATATTTACTATCTGGCCTTTGACAGAAAAAAATCAACCACCCCTGTTTCATTAATTTCTTGGGAATTTAGAGGGAATTCCTAAGTGGGAATTCTATATTCACCAGTGCAAAAGTCAGAATAAGCATCCTTTTTAAGGCAGACAAAATAAAATAGTTTATATCAGTTCTTATCTGGTATTCCTCTTTGGAGTTGTAAAAACAGGTCCAGCATCCAAAACCCAAAGAGCTCACCCAGAAGGCACCTGTACATCTTGACTGGAATCTTTTGGGCACTGACAATTTAAGGACAACTCCCAGGTCACCAATTTTCCTTTTTCCATCTGTCAGACTTTTCCTCCTCCATGAACTTTGGAAGGAAATGATGCCCAGCTGAGCAGGAATGTGTGTCCTTTTTTAG
Seq C2 exon
GAAGGAGTGAACTTCAAAATTGTGACTGTGGACTTCACACGGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAGAACCACAGGGACCTAGTCTCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167384:ENST00000221327:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains