MmuEX0053062 @ mm10
Exon Skipping
Gene
ENSMUSG00000057101 | Zfp180
Description
zinc finger protein 180 [Source:MGI Symbol;Acc:MGI:1923701]
Coordinates
chr7:24097821-24107692:+
Coord C1 exon
chr7:24097821-24097895
Coord A exon
chr7:24101448-24101568
Coord C2 exon
chr7:24104405-24107692
Length
121 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTGTGCTGTTGTAGGAA
3' ss Score
7.75
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AACTTTGTTCTACCCCAAGAGATGATCATTGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCATGCCTCAG
Seq A exon
GAAAGCACAGACTTCAAGATTGTAACTGTGGACCTTACAGAGGAGGGACAGAGCATGTGGAACAATGCCCAGAGAACCCCAGAGAAAACCGTGATCCTGGAAGGCCACAGGGACCTGTGGG
Seq C2 exon
ACTTGCCAGCTGTACATGGAACAGAAGGAGCCACCGCAAAGCAGACAATCTTCAATGAAGAACCATCCCATGGATTGAAGCTAGAGGGGTCGGCAAGAGATGACCCTTGGCTGTCAACATGTGAAGAAGTCCGAGACTGTAAGGAGCAGTCGGGGAAACAACCGAACAAGCAAGAGGAGGTGGCCTTTACCCAGGGTAGCGCTGGCTCTCCTGATACTGTCTACAGGGGTCATGACCCTGACAGGAGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCCCTCAGAAACCATTTCCATAAACAGGCGTCACATGTTAAAAAGTTGCATGGTGATGTCGTTGCAAGCAGTCACCAAAAGATCAGTGATAGCTCAGATCTCCTTGAAGATGACACAGCTGGGGCAGTTCCTCAGAGCATCCGCCCCTCTCAGTTCGTAAGCAGCCCACAAGGAGAGGAAGCCTATGAACTTAATGGCCATGTTCAAGCTTCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057101_MULTIEX1-4/5=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.722 C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PU(94.9=90.2)
C2:
PF0135222=KRAB=PD(2.6=0.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTCACTGGACATCATGC
R:
ACAGTATCAGGAGAGCCAGCG
Band lengths:
246-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types