RnoEX0101080 @ rn6

Exon Skipping

Gene

ENSRNOG00000029336 | Zfp180

Description

zinc finger protein 180 [Source:RGD Symbol;Acc:631380]

Coordinates

chr1:80929156-80940040:+

Coord C1 exon

chr1:80929156-80929230

Coord A exon

chr1:80933249-80933372

Coord C2 exon

chr1:80936736-80940040

Length

124 bp

Sequences

Splice sites

3' ss Seq

GAATGTGTGTGCTGTTCTAGGAG

3' ss Score

8.4

5' ss Seq

GGGGTGAGT

5' ss Score

7.93

Exon sequences

Seq C1 exon

AACTTTGTTCTACCCCAAGAGATGATCATCGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCTTGCCTCAG

Seq A exon

GAGAGCACAGACTTCAAGATTGTGACTGTGGACCTCACGGAGGAGGGACAGAGCACTTGGAGCAAGGCCCAGAGAACCCCAGAGAGACCTGTGACCCTGGCAGGCCCTGGAAGGGACCTGTGGG

Seq C2 exon

ATTCGACAGCTGTACACAGAACAGAAGAAACAACCTCAAAGCAGACCGTCTTTGATGAAGAACCATCCCATGGATCGAAGCCAGAGGTGTTGGCAAGAGATGATCCTTGGCTTTCTTCATGTGAGGAGCAGTTGGAGAAACAACAGGACAAGCAAGAGGAGGGGGTCTTGACCCAGGGTAGTGCTGGTCCTCCCGAGACTGTCTATGGGGATCCTGGCTTTGACAGGAGTTGCCTGAGTACCAGCCGGCCTTCATTCCCCATGATACCTCTCAGAAACCATTTTCATAAACAAGCGTCACATGTTAAAAAGTTACATGGTGATGTTGCAAATAGTCACCAACAGATCAACAACAATGCGGATTTCTTTGAAGATGACAAATCTGGGAAAGTTCCTCAGAGTCTTCATCCCACTCAGTGTATAAGAACCCCGAAAGGAAAGAAAGCCTGTGAATTTAATGGTCGTGTTCAACCCTTTGGCCAAGGTGTGCCCCTAAATCTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000029336_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.627 A=0.810 C2=0.265

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=73.8)

C2:

PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSRNOP00000026077