BtaEX0041122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006805 | ZNF180
Description
Bos taurus zinc finger protein 180 (ZNF180), mRNA. [Source:RefSeq mRNA;Acc:NM_001075644]
Coordinates
chr18:52626778-52642052:-
Coord C1 exon
chr18:52641932-52642052
Coord A exon
chr18:52636785-52636919
Coord C2 exon
chr18:52626778-52634091
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTTTTTTTTTTTAGATT
3' ss Score
10.94
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GAGGGAGTGAACTTCAAAATAGTGACTGTGGACTTCACTCAGGAAGAAGAAGGCACTTTGAGCTCTGCTCAGAGGACCCTGGACAGAGATGTGATCCTGGAAAACCACGGGGACTCTTGGG
Seq A exon
ATTTGGTTCACAAGTCTTTCTGGCCCTTGCCCCTAAATCATGAATTCTAATCCTATGGATTATCGTGGACCTGAAAACTCTGATCCTGGAGAGTTACTGAAAAATAGAGTTGAACTGAGAGAGCACAGAATGGAG
Seq C2 exon
ATTCATGGCCATAAACAGGTTCGTGTTACCTGAACCTTAAAAGAGAAAAGCCAATGAAGAGTGTCAGACAGCATGGACACATTTTTCAGGTCACATGGAATGCTGCAGTAAATACAACAGTCTGCTGGCTCGCCAGCAGTGACCCGGGTATGTTGAGATTTTTATGTGTCCAGACCTATCCGTATTGCCTGATTCCTCCTGAATATGCTCACAGAACACACAGCCACAGATGGAGCCCTTCGGAGGTTCAGCTCACATGTACCCAGCCTCACAGTTGCCCTGCAAGATGGTGTGATGAGAATGCCCACCAAGTGTGGGCTCTAAGACCAGGCTTGTGTGCTGCAGTCCCAGCTCAACACTTCCTCAGGCATGCTGGAGTAACTTAACTCGGCCACTTACCCTCTCTGTGCCTGGGTGTTCTCCTCTGTAAAATGAAGATCATGACAGTTTCTACCTCCATGTTCCTCTGAGGGTTAAAGAAGTTAGTATATGCACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006805_MULTIEX1-3/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.1)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACCACGGGGACTCTTGG
R:
GGCTGTGTGTTCTGTGAGCAT
Band lengths:
247-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development