BtaEX0041171 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038178 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:HGNC:13043]
Coordinates
chr28:13119457-13139284:+
Coord C1 exon
chr28:13119457-13119557
Coord A exon
chr28:13138770-13138896
Coord C2 exon
chr28:13139189-13139284
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTGAAATATGTTGTTTCAGGGA
3' ss Score
6.23
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TCAAGATAAGGTCTCTTAGGACTTCTGTCTTTCAACTTTTCCTCTCCTGACTTCATAGTTTCTATACTTTCCAATAGCAGCAGAAAATGAACAAGTACAGG
Seq A exon
GGACCAGTAACATTTAAGGATGTTACTGTGGAATTCACCCGGGAGGAATGGAAATTGCTGGACACTGCTCAGAGGACCCTGTATAGAGAAGTGATGCAGGAGAACTACAGTCACCTCATCTCAGTGG
Seq C2 exon
GCTATTGTGCAAATAGGCCAAATGCAATCTTCAAGTTGAAGCAAGGAAAAGAACCATGGATATTAGAAGTACAATTTCCACGTCAGAACAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038178-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=85.4)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAAGGTCTCTTAGGACTTCTGT
R:
CAGGGTTGTTCTGACGTGGAA
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development