HsaEX6088166 @ hg19
Exon Skipping
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:13043]
Coordinates
chr10:38245948-38260735:-
Coord C1 exon
chr10:38260636-38260735
Coord A exon
chr10:38246348-38246474
Coord C2 exon
chr10:38245948-38246043
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTGAAGTATGTTATTCCAGGGA
3' ss Score
2.08
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTGATTCCTGGGGCTGCCAGCTAAGGTCCCTTATGATTTCTGCTCTGGCTTTGCAGTTTTCAGCCTTTCCCAAGAGCAGCAGAAAATGAACAAGTTCCAG
Seq A exon
GGACCCGTGACATTAAAGGATGTTATTGTGGAATTCACCAAGGAAGAATGGAAGTTACTGACCCCTGCTCAGAGGACTCTGTATAAGGATGTGATGCTGGAAAACTATAGTCACCTTGTCTCAGTGG
Seq C2 exon
GTTACCATGTGAATAAGCCAAATGCAGTCTTCAAGTTGAAGCAAGGAAAAGAGCCATGGATATTAGAAGTAGAATTTCCACATCGGGGCTTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395-'2-7,'2-6,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTCCTGGGGCTGCCA
R:
GGGAAGCCCCGATGTGGAAAT
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)