MmuEX0053685 @ mm10
Exon Skipping
Gene
ENSMUSG00000072623 | Zfp9
Description
zinc finger protein 9 [Source:MGI Symbol;Acc:MGI:99210]
Coordinates
chr6:118466828-118477424:-
Coord C1 exon
chr6:118477307-118477424
Coord A exon
chr6:118467239-118467365
Coord C2 exon
chr6:118466828-118466920
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTCTAATTTGTTTTCTCAGGGA
3' ss Score
8.59
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAGACCTGGAGCTGTGGCCTATGATTTCCTAGGACTTCACTCTCCCAACTTTAGAGGGTAGAACACCACCACTCCCCATCCCCGCTCTAAAACACTGCAGAAAATGACCAAGTACAAG
Seq A exon
GGACCCGTGACATTAAGGGATGTTGCTGTGGAATTCTCCAAAGCAGAATGGAAGCTCCTGACCCCTGCTCAGAAGTCCCTTTACAAAAATGTAATGCTGGAGACCTTCAGTAACCTGTTCTCTGTGG
Seq C2 exon
GTTATCGTGTGGTTAAGCCAAGTGTGATTGCAAAGTTGAAGAAAGGAAAAGAGCCATGGCCATTAGAAGAATTTTTCCGTAAGAGCCGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072623-'4-5,'4-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTGGAGCTGTGGCCTAT
R:
CACCACGGCTCTTACGGAAAA
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types