RnoEX6014788 @ rn6
Exon Skipping
Gene
ENSRNOG00000006726 | Zfp9
Description
zinc finger protein 9 [Source:NCBI gene;Acc:100158232]
Coordinates
chr4:150520267-150522305:-
Coord C1 exon
chr4:150522300-150522305
Coord A exon
chr4:150520636-150520762
Coord C2 exon
chr4:150520267-150520362
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTCCAATTTGTCGTTGCAGGGA
3' ss Score
8.36
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
TTCAGG
Seq A exon
GGACCCGTGACACTAAGGGATGTGACTGTGGAATTCACCAAGGCAGAATGGAAGCTATTGACCCCTGCCCAGAAGTCCCTTTACAAGAATGTAATGCTGGAGACCTACAGTCACCTGGTCTCTGTGG
Seq C2 exon
GCTATCGTGTGGTCAAGCCAAGTATGATCTCCAAGTTGAAGAAAGGAAAAGAGCCATGGCCACTAGGAGCAGAATTTTTACGTAGGAGCTGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006726-'4-5,'4-3,5-5=AN
Average complexity
A_C2
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]