BtaEX0041227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007012 | ZNF3
Description
Bos taurus zinc finger protein 3 (ZNF3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046614]
Coordinates
chr25:36908818-36910439:+
Coord C1 exon
chr25:36908818-36908954
Coord A exon
chr25:36909950-36910041
Coord C2 exon
chr25:36910313-36910439
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACGGACCCTCTCGTCCTCAGCTC
3' ss Score
7.49
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCTTCCACCTTCTCATACAAACCCTGCTTCCTGCTGACTCTGAAAATAGGAGACCAGAGATCCGAGCTTCTAGTACGACCCATGGAAACTCAGGCTGATCGAGTATCTCAGGAACCTCAGGCCTTGCTTGAGAGCG
Seq A exon
CTCTTCCTTCCTCAAAAGGCCCCACGTTTTCTGACAAGGGCGGTCTGGGGGATGAGATGCTGGCAGCTGCGCTCCTGAAGGCCAAGGCCCAG
Seq C2 exon
GAACTGGTGACCTTTGAGGATGTGGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAGCCTGCCCAGAGGGACCTCTACAGGGACGTGATGCTGGAGAATTACGGCAACGTGTTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007012_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.290 C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCTTCTAGTACGACCCA
R:
ATTCTCCAGCATCACGTCCCT
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development