RnoEX0101032 @ rn6
Exon Skipping
Gene
ENSRNOG00000001341 | Zfp113
Description
zinc finger protein 3 [Source:RGD Symbol;Acc:6489147]
Coordinates
chr12:19291736-19294888:-
Coord C1 exon
chr12:19294834-19294888
Coord A exon
chr12:19292329-19292420
Coord C2 exon
chr12:19291736-19291862
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCCCTGGTATTGTCCTTCAGCTC
3' ss Score
8.04
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATGGAAACCCAGGCAGACCATGCATCTCAGGAACCCCGGCCCCTGTTAGAGAGCA
Seq A exon
CTCTTTCTTCTTCAAAAGTCCCTTCCTTTCCTGACAAGGACAGTCTCGGGGACAAGATGTTGGCTGCTGCACTTCTAAAGGCCAAGTCCCAG
Seq C2 exon
GAGTTGGTGACATTTGAGGATGTAGCTGTGTACTTCATCTGGAAAGAGTGGAAGCGTTTGGAGCCTGCACAGAGGGACCTCTACAGGGATGTGATGCTAGAGAACTATGGGAATGTGTTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001341-'3-4,'3-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAACCCAGGCAGACCAT
R:
TCCCATAGTTCTCTAGCATCACA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]