HsaEX6009310 @ hg19
Exon Skipping
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:13089]
Coordinates
chr7:99672758-99675056:-
Coord C1 exon
chr7:99674926-99675056
Coord A exon
chr7:99673165-99673253
Coord C2 exon
chr7:99672758-99672884
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCCCTTTTATTGCCCTTCAGCTC
3' ss Score
8.84
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGCTTCCTCATTCTCTTTTAAAACCCGCTTCCCGCTGAGTCTGCACCCAGGAGACCAGAGAGCACCTTGCCCTTCCATGGAAACTCAGGCTGATCTCGTATCTCAGGAACCTCAGGCCCTGCTTGACAGTG
Seq A exon
CTCTTCCTTCAAAAGTTCCTGCCTTTTCCGACAAGGACAGCCTGGGGGATGAGATGTTGGCGGCTGCGCTCCTAAAGGCCAAGTCCCAG
Seq C2 exon
GAGCTGGTAACCTTTGAGGATGTAGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAACCTGCTCAGAGGGACCTCTATAGAGATGTGATGCTGGAGAATTACGGGAATGTGTTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526-'7-20,'7-19,11-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.024 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3),PF074636=NUMOD4=PU(48.2=62.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAAAACCCGCTTCCCGCT
R:
CAGGTTCCAAACGCTTCCACT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)